Gasterosteus aculeatus (three-spined stickleback): 120834085
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Entry
120834085 CDS
T07457
Symbol
pms1
Name
(RefSeq) PMS1 protein homolog 1 isoform X1
KO
K10864
DNA mismatch repair protein PMS1
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gat03400
]
120834085 (pms1)
DNA repair and recombination proteins [BR:
gat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
120834085 (pms1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HATPase_c_3
HMG_box
HMG_box_2
HATPase_c
Motif
Other DBs
NCBI-GeneID:
120834085
NCBI-ProteinID:
XP_040057800
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Position
XVI:complement(6340525..6353123)
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AA seq
932 aa
AA seq
DB search
MNRFNGVSCQKDTSNETMKQLPADTVRLLSSSQVITSVVNVVKELMENSLDAGASSVDVK
LENSGLDRIEVRDNGHGIKGEDTPVMAAAHFTSKICSTEDLEMLETYGFRGEALGSICSV
AEVTVVTKTEEDDISTQYTLNFSGEIVSQKPSHFGQGTTVSVLKLFKNIPVRRQYYSSTK
KCKEELKKIQDLLTAYAIIKPELRLTLIHNKVVVWQKATVADHRSALLATLGASTVANLL
PCHHQQEQPELLLDGFFPKPGADYSSTSNSNPDKTFIFVNSRPVHQKDIMKLLRQHYAAQ
YPDDPARNRYPTAMLKITVPPSSVDVNLTPDKTQVLLHNKEAVLTAVEALLVSLYGYRAD
GDPPAEKQAGLETPPSPPGSVRADASPPDQSAERHAGLAGRRGNLPNSGGDAAPSAGISA
DASLRRRTSDGSSSSSVAEDWVVNQIPAGVECSAFFHADETAQSARAATVGLVERLEDED
KAAAASGAASSEGRISAADWSRGTALIDPATREPLRPVEIHQAPRNGAPDCEVEGRSSSN
RKMLNAITEKRASLTAYDLISNRATRAPLTPVALFEKEARAEVLREKPTASLLDVSGAVH
ERWKNLREEDRKKYEEKAQKHLEHHDQRTKLASAEGHRGASGSPSRGPAQGQKRKAPLSN
QQLLDQLFAAQPQKKARSPAPKPSQLLPCSVAALRLQLQRLSSQRSAVPRGLRLVNRLAS
QSAWVILYGQRLMLLNPFRVEEALLFKRLLENNILPAVSLQNPIELTDGILGGAEYAEAL
CNMEKRSPELNGGALFCDPRLLANGFEIRLTPGLTSAERHLEVTAMADCVPFLGVEDLRE
ILTAVLHRKARTLQECRPLKVKNYLQGEAVRLARQLPTNLSREDVEETLLRMHQQLAGSN
QTCIHGRPFLRHLSDIPSTDQEAKALLRPLEL
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgattcaacggggtcagctgtcaaaaagacacgtccaacgagaccatgaagcag
ctgcctgcggatactgtgcggctgttgtcgagctcccaggtcatcacctctgtggtgaac
gttgtgaaagagctgatggaaaactccctggatgccggggcttccagcgtcgacgttaaa
ctggagaactccggtttggaccggatagaagtgcgggataacggccatggaatcaaaggt
gaagatactcctgtgatggccgcggcgcactttacttcaaagatctgcagcacggaggac
ctggagatgctggagacgtatggcttcagaggagaggcgctgggctctatctgctccgtg
gccgaggtgactgtcgtcacaaagacagaggaggatgacatcagcacccagtacacgctt
aacttctcaggggagattgtctctcagaagccgtctcacttcggtcaaggcacaacagtg
agcgtactgaagcttttcaagaacattccggtgagacgtcaatactactcctctacaaag
aagtgcaaggaggaactgaagaaaatacaggacctgctgacggcctacgccattataaag
ccggagttgaggctcacgctcattcacaataaggtggtggtttggcagaaggccacggtg
gccgatcacagaagtgccctccttgctaccctgggcgccagcaccgttgccaacctgctc
ccttgccaccaccagcaagagcaaccagagttgcttttagatggattttttccaaagcct
ggagcggattactcctcaaccagcaattccaaccctgacaaaacatttatatttgtcaac
agtcggcctgtccaccaaaaagacataatgaagttgctacgtcaacactacgccgctcag
tatcccgatgacccggcccgaaaccgctatcccaccgccatgctgaaaatcaccgtccca
ccatcctcagtcgacgtcaatctgactccggacaagacccaggttcttctccataacaag
gaggccgtgctcaccgcggtagaagcgttactggtttctctctatggctaccgggccgac
ggcgaccccccggcggagaagcaggccggcctcgagacacccccctcgccgcccggctct
gtgcgggccgacgcttcgccgccagaccaaagtgcggagcggcacgccggcctcgccggt
cgccgcggtaacctccccaacagcggcggcgacgccgccccgtcggcgggaataagcgct
gatgcttcgctgcgccgccggacctctgacggcagctcttcgtcgtccgtggcggaggac
tgggtcgtcaaccagatcccggccggcgtcgagtgcagcgcgttcttccacgccgacgag
acggcccagagcgctcgggcggcgacggtgggtttggtggagagactcgaggacgaggac
aaggccgcagccgcgtcaggcgcggcctcgagtgaaggccggatatcggccgcggactgg
agccgggggacggctttgatcgacccggcgacacgagagcccctgcggcccgtcgaaatc
catcaagcgccgaggaacggtgcccccgactgcgaggtcgagggtcggagcagctcgaac
agaaagatgctcaacgccatcacagagaagcgggcctctctgacggcctacgacctgatc
agcaaccgcgccacgagggcgccgctgactcccgtcgccctgttcgagaaggaggccaga
gcggaggtcctcagggagaaacccacggccagcctgctggatgtcagcggcgccgttcac
gagaggtggaaaaatctgagggaggaggaccgtaagaagtatgaggagaaggcccaaaaa
cacctggaacaccacgaccaaaggaccaagttggcctctgccgagggccacagaggggcg
agtgggagcccctcgaggggccccgcacagggccagaaacgcaaggccccgctgtccaac
cagcagctgctggaccagctcttcgctgcacagccccagaagaaggcgaggagccccgcg
cccaaaccctcgcagctcctcccctgcagcgtagctgcccttcggctgcagctccagcgc
ctttcatcccagcgcagcgcagtgccacggggcctccgtcttgtaaaccggctggcctct
cagagcgcctgggtcattttatatggtcagaggctcatgttgttaaacccatttcgagtg
gaggaggccttactgtttaagagactcctagagaataatatacttccagcagtgagtctc
cagaaccccatagagttaacagatggaattctagggggggctgaatatgctgaggctttg
tgcaatatggagaaacggagccccgagctaaacggaggggccttgttctgtgatccccgg
ctgctcgctaacgggtttgaaatcagactcactccaggcctcacgtcggccgagagacat
ctggaagtgacagcaatggcagactgcgtgcctttcctcggcgtggaggacctcagggag
atcctgacagcagttcttcacaggaaggcccggacgctgcaagagtgccggccgcttaaa
gtcaaaaactacctgcaaggtgaagcggtacgacttgcccgtcagttacctacaaatcta
tccagggaggatgtggaggaaacccttctacggatgcaccagcagctcgctgggagcaac
cagacctgcatccacggacggccgttcctccgacacctgtcagacattccttccacagac
caggaagctaaagctctgctgaggcctttggagctgtag
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