Gemmatirosa kalamazoonensis: J421_4010
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Entry
J421_4010 CDS
T03025
Name
(GenBank) DNA polymerase LigD, ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gba
Gemmatirosa kalamazoonensis
Pathway
gba03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
J421_4010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gba03400
]
J421_4010
Enzymes [BR:
gba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
J421_4010
DNA repair and recombination proteins [BR:
gba03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
J421_4010
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AHG91547
UniProt:
W0RM59
LinkDB
All DBs
Position
complement(4634186..4635163)
Genome browser
AA seq
325 aa
AA seq
DB search
MYASTGATLPTGPGWTFEPKYDGIRVIAVATAGEARLFTRNGNDKSRQFPEIAAALRALA
ARAGRSLVLDGEVVALDAGEPARFQALQSRMHVEDPRAVALHATQAPSALVAFDLLLDGD
EPLIARPWRERRTRLERVLGRRGRGGKGGRLRLGHTEADGAALLARARDAGWEGILAKRT
DATYAPGVRTRHWLKLKVEQRQEFVVGGYTEPRESRKHLGALLLGYYDRDGRFVYAGHTG
GGFTHAGLADMARRLRPLARATSPFTEAIKTNAPAHWVRPEVVVEVKFSEWTADGRLRQP
IFVGVRDDKPARDVRREPVARSGAA
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgtacgcgagcaccggcgcgacgctgccgacgggtccgggctggacgttcgagccgaag
tacgatggcatccgcgtgatcgccgtcgcgaccgccggcgaggcgcgcctgttcacgcgg
aacggcaacgacaagtcccgccagttccccgagatcgccgccgcgctccgcgcgctcgcc
gcgcgggcaggccgctcgctggtgctcgacggcgaggtcgtcgcgctcgatgcgggcgag
cccgcgcgcttccaggcgctgcagtcgcgcatgcacgtggaggatccgcgtgcggtcgcg
ctgcacgccacgcaggcgccgagcgcgctcgtcgcgttcgacctgctgctcgacggcgac
gagccgctgatcgcgcgcccgtggcgcgagcgccggacgcggctcgagcgcgtcctcggg
cgccgggggcgcggcgggaaggggggccgcctgcgactcggccacaccgaggccgacggt
gcggcgctgctcgcacgcgcacgcgacgcggggtgggaggggatcctcgccaagcgcacc
gacgccacgtatgcgcccggcgtgcgcacccgccactggctcaagctgaaggtggagcag
cgccaggagttcgtcgtcggcggctacacggagccgcgcgagagccgcaagcatctcggc
gcgctgctgctcggctactacgaccgcgacggccgcttcgtctacgcgggccataccggc
ggcgggttcacgcacgccggcctggccgacatggcgcggcgcctcaggccgctcgcgcgc
gccacatcgccgttcaccgaggcgatcaagacgaacgcgcccgcgcactgggtgcggccg
gaggtggtcgtcgaggtgaagttcagcgagtggaccgccgacggtcggctgcggcagccg
atcttcgtcggggtgcgcgacgacaagccggcgcgagacgtccggcgcgagccggtcgcg
cggagcggcgccgcctaa
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