Gemmatirosa kalamazoonensis: J421_5987
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Entry
J421_5987 CDS
T03025
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gba
Gemmatirosa kalamazoonensis
Pathway
gba03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
J421_5987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gba03400
]
J421_5987
Enzymes [BR:
gba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
J421_5987
DNA repair and recombination proteins [BR:
gba03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
J421_5987
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
DNA_primase_S
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
AHG93522
UniProt:
W0RSS2
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All DBs
Position
p2:complement(526129..528768)
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AA seq
879 aa
AA seq
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MTADGNEQTPTSDHLSRYRAKRSADTTPEPMGSVSPVLGRLFVVHKHAARQLHFDLRLEM
DGVLRSWAVPKGPSYDMNDRRLAVKVEDHPIEYGDFEGIIPAGNYGAGGIIVWDRGEWVP
LEDWREGLEKGKLLFELRGHKLHGKWTLVKIKKSDRDWLFIKERDAWVRTPGDDFPETSV
LSGLTVEEVKAGKSPTGRVRAALMEAGAPATRVDPRAVEVMLAEPADEAFTRAGWLFEPK
LDGYRLLAAKTRGDVLLLTRNGNDYTNVFPEIARAVRAIPCHECIVDGEVVVLDPRGMPN
FALMQRRGQLTSPLDIRRMAVELPATYYAFDLLAFEEFDVRPLPLVRRKALLAELVPSLG
VLRSVDHHEREGERFLQHASAIGLEGMIAKRADAPYRGGRTDAWLKIKSARTGDFAIVGF
TAPNGGRRHFGALQLADMVGGRLVYAGRVGTGFDDAQLARLGAMLQPVIRSDAPCDGPVA
APGAEPAAAIPETGTTTWVDPVHVCEVRYAEWTPDGLLRHASFLRMRTDKHPRDCDRQRW
PAHEPEPVPMTVAVDVADAADAVEESEAAPVAPEPPRPVEKTFAFSNLSKRYWPAEGYTK
GDLVEYYRAIAPRMLPYLSDRPVVLTRFPDGIEGKSFYQKDAPEFTPPWVRTIPIWSEES
QREIRYFVCNDVETLLYLANMASIPLHIWASRVGSLEQTDWCVIDLDPKEAPFSDVVRTA
LVLREICESIGLPSYVKTTGKTGLHILVPLGRQCTYAQSRMLGELLARVVLARVRDIATI
TRHVTKRGDKVYLDYLQNRHGQTIVAPFSVRPLPGATVSMPLRWEEVNASLDPKAFTIRT
ALDRMDRLGVDPMLDVLAESPDLQLVLQRLAQVLAADAR
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgacggcaacgagcagacacccacgtccgatcatctcagtcggtaccgcgcc
aagcggtcggccgacacgacccccgagccgatggggagcgtgtcgccggtgctcggccgg
ctgttcgtcgtgcacaagcacgccgcgcgacagctgcacttcgatctgcggctcgagatg
gacggcgtgctccgctcgtgggccgtgccgaagggaccgtcgtacgacatgaacgaccgg
cggctcgccgtgaaggtcgaggaccacccgatcgagtacggcgacttcgaggggatcatc
cccgccggcaactacggcgccggcgggatcatcgtgtgggaccgcggcgagtgggtgccg
ctggaggattggcgggaggggctcgagaaggggaagctgctgttcgagctccgtggccac
aaactgcacggcaagtggactctggtaaagatcaagaagagcgatcgcgactggctcttc
atcaaggagcgcgacgcgtgggtccgcaccccgggcgacgacttccccgagacgtcggtg
ctgtcgggactgacggtcgaggaagtgaaagcaggcaagagtccgacggggcgcgtgcgc
gccgcgctcatggaggccggcgcgcccgcgacgcgcgtcgatccgcgtgccgtcgaggtg
atgctggccgagcccgcggacgaggcgttcacgcgcgccggctggctgttcgagccgaag
ctcgacggctatcgactgctcgccgcgaagacgcgcggcgacgtgctgctgctcacgcgt
aacggcaacgactacacgaacgtgtttcccgagatcgcgcgtgccgtgcgcgcgatcccg
tgccacgagtgcatcgtcgacggcgaggtcgtcgtgctcgacccgcgcggaatgccgaac
ttcgcgctcatgcagcggcgcggccagctcacgtcgccgctcgacatccggcgcatggcc
gtggagctgccggcgacgtactacgcgttcgacctgctcgcgttcgaggagttcgacgtc
cggccgctgccgctcgtgcggcgcaaggcgctgctcgccgagctggtgccctcgttaggc
gtgctgcgctcggtggaccaccacgagcgcgagggcgagcggttcctgcagcacgcctcg
gcgatcgggctcgaggggatgatcgcgaagcgggccgacgcgccgtaccgcggcgggcgc
accgacgcgtggctcaagatcaagtcggcgcgcaccggcgacttcgcgatcgtcggcttc
accgcgcctaacggcgggcggcggcacttcggcgcgctgcagctcgcggacatggtcggt
gggcggctcgtctacgcgggccgcgtgggcacgggcttcgacgacgcgcagctcgcgcga
ctcggcgcgatgctgcagcccgtcatccgcagcgacgcgccgtgcgacgggcccgtcgcc
gcgccgggcgcggagcccgctgccgcgatccccgagacggggacgacgacgtgggtggat
ccggtgcacgtgtgcgaggtgcgctacgccgagtggacgccggacggtctgctgcggcac
gcgtcgttcctgcgcatgcgcaccgacaagcacccacgcgactgcgatcggcagcggtgg
cccgcgcacgagcccgagccggttccgatgaccgtcgccgtcgatgtcgccgacgccgcg
gacgccgtcgaggaaagcgaggcggcccccgtcgcgccagagccgccgcggcccgtcgag
aagacgttcgcgttctccaacctgtccaagcgctactggccggcggagggatacacgaag
ggcgacctcgtggagtactaccgcgcgatcgcgccgcgcatgctgccgtacctcagcgat
cgtcccgtggtgctcacgcgcttccccgacggcatcgaggggaagtcgttctatcagaag
gatgcgccggagttcacgccgccgtgggtgcgcacgatcccgatctggagcgaggagtcg
cagcgcgagatccgctacttcgtgtgcaacgacgtggagacgctgctctacctcgcgaac
atggcgtccatcccgctgcacatctgggcgagccgcgtcgggtcgctggagcagacggac
tggtgcgtgatcgacctcgacccgaaggaggcgccgttctccgacgtcgtgcgcacggcg
ctcgtgctgcgcgagatctgcgagtcgatcgggctgccgagctacgtgaagacgaccggc
aagaccgggctgcacatcctcgtgccgctgggccgccagtgcacgtacgcgcagtcgcgc
atgctcggcgagctgctggcgcgcgtcgtgctcgcgcgcgtgcgcgacatcgcgacgatc
acgcggcacgtgacgaagcgcggcgacaaggtctacctcgactacttgcagaaccggcac
ggccagacgatcgtcgcaccgttcagcgtgcggccgctccccggcgcgacggtgtcgatg
ccgctgcgctgggaggaggtgaacgcgtcgctcgacccgaaggcgttcacgatccgcacg
gcgctcgaccgcatggaccgactcggcgttgacccgatgctcgacgtgctcgccgaatca
cccgacctgcagctcgtgctgcagcggctcgcgcaggtgctcgccgcggacgcccgttag
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