Geobacter benzoatilyticus: JZM60_09845
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Entry
JZM60_09845 CDS
T07995
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gbz
Geobacter benzoatilyticus
Pathway
gbz03030
DNA replication
gbz03410
Base excision repair
gbz03420
Nucleotide excision repair
gbz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gbz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JZM60_09845 (ligA)
03410 Base excision repair
JZM60_09845 (ligA)
03420 Nucleotide excision repair
JZM60_09845 (ligA)
03430 Mismatch repair
JZM60_09845 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gbz03032
]
JZM60_09845 (ligA)
03400 DNA repair and recombination proteins [BR:
gbz03400
]
JZM60_09845 (ligA)
Enzymes [BR:
gbz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JZM60_09845 (ligA)
DNA replication proteins [BR:
gbz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JZM60_09845 (ligA)
DNA repair and recombination proteins [BR:
gbz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JZM60_09845 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JZM60_09845 (ligA)
MMR (mismatch excision repair)
DNA ligase
JZM60_09845 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JZM60_09845 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
E1-E2_ATPase
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QSV44475
LinkDB
All DBs
Position
complement(2081380..2083395)
Genome browser
AA seq
671 aa
AA seq
DB search
MDKPAAVRRIAELRAEIRRHDHLYYVLDRPELTDAEYDLIYRELVKLEAEFPDLVTTDSP
TQRVGGAPLDKFEQVTHRIPMLSLENAFTDGDIAEFDDRVKRFLGLSGAEEISYVCEPKL
DGLAVELIYENGTLTVGSTRGDGVVGENVTQNLKTVKSIPLRLEGDNPPELLEVRGEVFL
PLAAFQRLNAQREEEGEPPFANPRNAAAGSLRQLDSRITARRPLAMFCYAPGELRGVDFD
SQWEFLSALRQQGLPVTSLTRQVTGVAGVLAYYREMTEQRDTLPFEIDGVVVKVDSFPLQ
RELGEKSRSPRWAVAVKFPPRQAVTVIEDVVPSVGRTGVITPTANLRPVEVSGVTVSRAT
LHNWEEMERKDIRIGDTVVIERAGDVIPAVVRVLTEKRTGSERFLPIPAACPECGSEVVK
IPDEVAVRCMGLSCPAQIRESIIHFASRNAMDMEGLGEKYIEQLLRLGLVGNVADLYILG
RDDFMKFDRMGDKLAENLLNAIEASKKRELSRFIFALGIRHVGEHTAKLLATAFGSIDNL
ARATDEELLSIREIGPQVARSITTFFHNEGNREAIRRMIAAGVEPTVEEKKVGGKFTGKT
FVFTGALTRFSRSEAQKMVENEGGHAAGSVSKKTDFVVAGAEAGSKLEKARQLGVTVLTE
DQFLEMMGGEQ
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggacaagcccgccgccgtgcggcgcatcgccgagcttcgcgccgaaataaggcgccac
gaccacctctactacgtcctcgaccgcccggaactcaccgacgcggaatacgaccttatc
tatcgcgaactggttaagctggaggcggaattccccgacctcgtcaccaccgactccccc
acccagcgggtgggcggggcgcccctggacaagttcgagcaggtaacccaccgcatcccc
atgctctccctggagaatgccttcaccgacggcgacatcgccgagttcgacgaccgggtg
aagcgctttctcgggctttcgggagcagaggaaatctcctatgtctgcgaaccgaagctg
gacgggctcgcggtggaactgatctacgagaacggcacactcaccgtgggctccacaagg
ggcgacggggtcgtgggggaaaacgtcacccagaacctgaaaaccgtaaagagcatcccc
ctgcggctcgaaggggacaatcctccggagctcctggaggtgcggggcgaggtatttctc
cccctggcggccttccagaggctgaacgcccagcgggaggaggagggtgagccccccttc
gccaacccccgcaatgcggcggcgggctccctccggcaactggactcgcgcatcacggcc
cggcgccccctcgccatgttctgctacgcgccgggagagcttcggggcgtcgatttcgat
agtcaatgggagttcctctccgccctccggcagcaaggtctgccggtaacctcactgacc
cggcaggtgacgggggttgccggggtcctcgcctactaccgcgagatgaccgaacagcgc
gacaccctccccttcgagatcgacggtgtcgtggtgaaggtggactccttccctctccag
cgggagctgggtgaaaagagccgctccccccgctgggccgtggcggtgaagttccccccc
cgccaggcggtgacggtcattgaggatgtcgtcccctccgtggggcgcaccggggtcatc
acccccacggcgaacctgcgccccgtggaggtctccggcgtcacggtctcccgggccacc
ctccacaactgggaggagatggagcgcaaggacatccgcatcggcgacacggtggtgatc
gagcgggccggcgacgtgatcccggcggtggtgcgggtgctcaccgagaagcgcacgggg
agcgagcggttcctccccattcccgccgcctgccccgagtgcggctccgaggtggtgaaa
atccccgacgaggtggcggtccgctgcatggggctctcctgcccggcccagatccgggag
tccatcatccacttcgcctcccgcaacgccatggacatggaggggctcggcgaaaagtac
atcgagcagctcctgcggctggggctcgtggggaacgtggccgacctctacatcctcggc
agggatgacttcatgaagttcgaccggatgggggacaagctggcggaaaacctcctgaac
gccatcgaggccagcaagaaacgggaactctcccgcttcatcttcgccctcggcatccgc
cacgtgggggagcacaccgctaagctcctggccacggccttcgggagcatcgacaacctg
gcccgggccacggacgaagaactcctctccatccgggagatcggcccccaggtggcccgg
agcatcaccacctttttccacaacgaggggaaccgggaggccatccggcggatgattgcg
gccggggtggagccgacggttgaagaaaaaaaggtgggggggaagttcacggggaagacc
ttcgtcttcaccggggccctcacccgcttcagccggagcgaggcccagaagatggtggag
aacgaggggggccacgcggccggatcggtgtcgaaaaagaccgacttcgtggtggccggg
gccgaggcggggagcaagctggagaaggcccgtcagcttggggtgacggtcctcacggaa
gatcagttcctggaaatgatggggggagaacaatga
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integrated database retrieval system
