Gymnogyps californianus (California condor): 127012937
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Entry
127012937 CDS
T08687
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
gcl
Gymnogyps californianus (California condor)
Pathway
gcl04510
Focal adhesion
gcl04512
ECM-receptor interaction
gcl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gcl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127012937
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127012937
09142 Cell motility
04820 Cytoskeleton in muscle cells
127012937
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gcl04147
]
127012937
00536 Glycosaminoglycan binding proteins [BR:
gcl00536
]
127012937
Exosome [BR:
gcl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
127012937
Glycosaminoglycan binding proteins [BR:
gcl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127012937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
127012937
NCBI-ProteinID:
XP_050747357
LinkDB
All DBs
Position
1:65033624..65181009
Genome browser
AA seq
1715 aa
AA seq
DB search
MDISQLPSARIFICQDLGLLLILMEVVLSAVKVDAGGKSYTGPCGGRDCSGGCQCFPEKG
SRGQPGLLGSQGFTGPPGLMGIPGVQGPKGHKGERGYPGISGPKGEMGQRGVTGFPGADG
IPGHPGQPGSRGKPGHDGCNGTVGDPGDSGSPGLSGFPGTIGVQGPKGQKGEPYILPPDI
ASRYRGEPGDPGFNGFQGPPGTLGIQGPVGPRGERGRPGPPGPPGPPGPQGNRGLGFYGE
KGEQGPPGPPGPPGLPTRELMGVPSDKHKGERGEPGQKGEAGIPGVLLYAPEKGEEGVMG
FPGQRGLPGINGFPGLSGERGFPGFDGPPGGYGPRGSKGEPGEIGPPGPVSYFPSRIPRK
GARGEPGFPGVSGLQGDPGEEGDRGLPGLPGFSDVDGDKPGLPGEMGPKGEKGELGSPAY
QVGPPGFPGKHGTPGLRGPPGPTGSPGSLFGLKGREGMPGRFGMQGFPGPRGQKGPKGEE
GDCSKCLVGDEMRRGSTGPPGPPGFPGTPGQPGRKGEPGDQGPHGIPGYPGAKGFSGPDG
FPGPKGEKGDSLYITTKGTKGIRGDPGLPGIRGEDGFAGRDGLDGLPGQPGLPGDSIRGF
PGDPGYPGELGPKGFPGEAGLPGKGFPGPKGYRGPPGDHGQDGNPGPPGLPGLPGEPGQL
DCGQVIEDFSRGDGTEPIWSGAGCVRPPKGSQGKPGLPGATGAKGTRGFPGDPGPVGYPG
LNGTRGDPGREGFPGPPGFTGPRGDRGPNGLPGLQGHPGLTGKPGAPGAAGLKGFPGDVL
GAAAGSRGDVGLPGFPGLKGMPGDQGVPGIRGADGNPGLPGPKGDPGPQGLPGLMGLPGT
PGTRGFPGPPGNPGPDGGPGSQGPVGPPGARGEDGEQGFPGPVGLKGLSGDKGETGYPGL
QGIPGVTGPPGISGMDGFPGDKGSRGSPGIDGFKGMTGLKGRPGIKGIKGEFGPFGARGD
KGSQGSRGFKGDRGDQGPPGEPPKLKPSMMMEVKGEKGDAGETGTKGFFGLKGSKGMPGI
PGKTGTPGSPGHPSYVVGVKGDIGTKGLTGLKGYPGPAGSPGIRGFPGSTGGRGEKGIPG
IAGHFGTPGSHGEIGEQGDTINLPGMPGLKGEVGVPGLTGTRGRIGQKGEGGDPGFPGIE
GLKGTQGVPGSVGQEGLPGLVGPPGQQGSPGTPGFQGEKGTPGWPGLPGQAGLPGLRGIS
GLHGLPGTKGFPGSPGPDSYGSAGFPGAVGDKGEAGEPSRVEGSRGPPGQKGDRGVPGVQ
GPFGIPGQEGFPGPPGISNISGYPGEKGSPGLDGVPGYPGLQGQPGIPAPPGSKGESGQT
GVSGQIGPKGSRGDPGSAGRRGIPGYPGPKGRKGEQGVIGFMGTVGFPGDLGPIGPKGDR
GVTGFQGPPGSPGLSPLPPRLVAEQGLPGPRGNIGPQGSPGDMGPHGPPGDPGFRGSPGE
PGLQGRGGIPAPPGSRGEQGATGFQGPVGFEGQPGRPGSPGLPGMPGRSVSMGYLLVKHS
QSDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDICY
YASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQEASIPHCPEGW
RSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWL
TTVDQPFQSKPSADTLKAGLIRSHISRCQVCMKNL
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atggacatctcgcagcttcccagtgcacgtatttttatttgtcaggatctggggcttctg
ctgatcctgatggaagtcgtgctgtcagccgtcaaagtggatgctggtggaaagtcttac
acaggaccatgtggaggcagagactgcagtggaggatgtcagtgtttccctgaaaaagga
agccgtggccagccaggactccttggatcacaggggttcactggaccaccaggattgatg
gggatcccaggagtgcaaggtcccaaaggtcacaaaggtgaaagaggatatccaggaata
agtggacccaaaggagaaatggggcaaagaggagtcactggattccctggggcagatggc
attcctggtcatccagggcagccaggatcaagggggaaaccgggtcatgatggctgtaat
gggacagtaggtgaccctggtgactcgggaagtcctggactctctggtttccctggtacc
attggagtccaagggccaaagggccagaagggggagccctacatactgccaccagacatc
gcaagccgatacaggggggaacctggggatccagggttcaatggttttcaaggacctccg
ggtacgctgggtattcaaggacctgttggtccaagaggagagcgaggaagaccaggacca
ccagggcctccaggaccaccaggaccacaaggcaacaggggccttggcttctatggagaa
aaaggtgaacagggccctccaggtcctccaggtccacctgggcttcctacaagagaactg
atgggtgtcccctctgacaaacacaagggtgaaagaggagaacctggacaaaaaggggaa
gctggaattccaggtgtacttctctatgctcctgaaaaaggtgaagaaggggtaatgggc
ttcccaggacaaaggggactgcctggcatcaatggttttccaggactcagtggagaaaga
ggttttccaggatttgatggtccaccaggtggctatggtcctaggggaagcaagggggag
ccaggcgagattggtcctccaggaccagtttcctattttccttcccgcatcccaaggaaa
ggtgcaagaggcgaaccaggctttccaggtgtttctggactacagggagacccaggagag
gagggagatcgtgggctgcctggtcttcctggattctctgatgtggatggggataagcca
ggcttacctggagaaatgggaccaaaaggcgaaaaaggtgaattaggatctcccgcttat
caggtgggcccgcctgggtttccgggtaagcacggcacaccaggactccgtggtccacct
ggtcccactggatcccctggctctctctttggattaaaaggacgggaggggatgccaggt
agatttggcatgcaaggtttccctgggccaagaggacaaaaaggacctaaaggcgaagaa
ggggattgcagtaaatgccttgtgggtgatgaaatgagaaggggctctactggcccccct
ggccctcctggctttccaggaacccctggccagcctgggaggaaaggagaacctggtgat
caaggaccacatggtattcctggctaccctggagcaaaaggattttcgggtccagatgga
tttcctggaccaaaaggagaaaagggagattctttatacataactactaaaggcaccaaa
ggaatccgaggagatcccgggctgcctggtatcagaggtgaagatggtttcgcaggcaga
gatggattagatggtttaccaggacagcctggccttccgggtgatagtatcagaggtttc
cccggcgatcctggttatccaggcgaattaggcccaaagggctttccaggagaagcaggc
ctgccaggtaaaggatttcctggtccaaaagggtaccggggtcctccaggtgaccatgga
caagatggaaacccaggacctccaggtctgcccggtctgccaggagaacctggccaacta
gactgtgggcaggtcattgaagacttttctagaggagatggaaccgagccaatatggtca
ggcgcgggctgtgtgaggccaccaaagggatcccaaggcaagccaggactgccaggagcc
acaggtgcaaaaggtacaagaggattcccaggtgatccaggtccagtgggatacccaggg
ctaaatggtacacgaggtgatccaggtcgggaaggattcccaggtcctccaggttttact
gggcccaggggagacaggggcccgaacggtctacctggactgcagggacacccaggcctt
acaggaaaacccggtgctccgggagcggcaggactgaagggctttcctggtgacgtttta
ggagcagcagcaggttcccgaggagatgtcgggctccccggcttcccggggttgaaaggc
atgccaggagatcaaggagtaccaggaattagaggagcagatggtaacccaggtttgcca
ggacccaaaggagatccagggccgcaaggtctaccgggtttgatgggattgccaggaaca
ccaggaacgcgtggattcccagggccaccaggaaaccctgggccagatggcgggcctggc
tctcaaggacctgttggtccacctggtgctaggggagaagatggtgagcaaggttttcct
ggccctgtgggcctgaaaggtctgtctggtgacaaaggtgaaacaggttacccaggatta
caaggtatacctggcgtgactggtccccctggcataagtggaatggatggctttccagga
gataaaggctcaagaggttcacctggcattgatggtttcaaaggcatgacaggcctaaaa
ggaagaccaggcatcaagggaatcaaaggagaatttggcccgttcggggctcggggcgat
aaaggctcacagggctcacgtggttttaaaggtgaccgtggagatcaaggcccaccggga
gaacccccaaagctcaagcccagcatgatgatggaagttaaaggtgaaaaaggagatgct
ggagaaacgggcacaaagggattctttggcttaaaaggtagcaagggaatgccaggcatt
cctggaaagacaggaactccagggtcccctgggcatcccagctacgtggtcggtgtgaaa
ggagacattggcacaaaagggctgacaggtctgaaagggtatcctggtccagccggctct
cctggcatcagaggcttccctggcagcacaggaggccggggagaaaagggtattccagga
attgcaggccattttggtactcctggctcacatggtgaaataggtgagcagggagatact
ataaacttaccaggaatgccaggccttaaaggggaagttggtgtgccaggcttaacaggc
acaagaggacgcataggacaaaaaggcgaaggtggtgatcctggtttccctggcattgaa
ggcctcaagggcacgcagggtgtccctggctctgtgggacaggaaggtttgccaggactg
gtcggccccccagggcagcaaggaagccccgggacacctggatttcaaggtgaaaaggga
actcccggctggcctggcttaccaggacaagcaggcttgcctggcttaagaggaatcagt
ggactgcatggtttaccgggcactaagggcttcccaggatcaccaggtccagacagctac
ggctctgcaggtttcccaggtgcagtgggtgacaaaggggaagcgggagagccgagcaga
gtggaaggcagccgaggacctccgggtcagaagggagacagaggtgttccaggagtccaa
ggaccctttggcattcctgggcaggaaggatttccagggcctcctggaatttcaaatata
tcagggtatcctggtgaaaaaggctccccaggtctagatggagtgccaggctatccagga
ctacaggggcagcctggaataccggctccaccaggaagcaaaggagaaagtggacaaaca
ggtgtgagtggacaaattggcccaaaaggaagtagaggtgatcctggatcagcagggaga
cgtggcattcctgggtaccctggaccaaaaggtcgtaagggtgaacaaggtgtcatcgga
tttatgggcacagtaggatttccaggtgatttgggacctatcggacccaagggggataga
ggagtaactggctttcagggccctccaggctctcctggcctgtcccctcttcctccaagg
ctggttgctgagcaaggtttaccaggtccccgtggaaatataggacctcaaggaagccca
ggagatatgggacctcatggtccaccaggtgatccaggtttcagaggctcacctggagag
ccaggactccagggcaggggtggcattccagctcctcctggctccagaggtgaacaagga
gcaacagggtttcagggtccagtgggatttgaaggtcagccaggccgccccggtagcccc
gggctgccaggcatgccgggtcgcagtgttagcatgggctacctgttggtgaagcacagc
cagtccgatcaagagccaatgtgcccagttggcatgaacaaactctggagtggatacagc
ctactgtactttgaaggacaagagaaagcacacaaccaggatctagggctggctggctca
tgtttggctcgttttagtactatgccattcctctactgtaaccctggggatatttgttat
tatgcaagtcgaaatgataaatcctactggctctcaactacagcacctcttccaatgatg
cctgtggcagaagaagacattaggccatatatcagtcgctgctcagtttgtgaggcccca
gctgtggcaattgctgtccatagccaagaagcttctattcctcactgccctgaaggctgg
cgcagtttgtggatcggatattccttccttatgcacactgctgctggtgatgaaggtgga
ggacagtcgctggtttctcctgggagctgcctggaagatttccgagcgactcctttcatc
gaatgcaacggcgcacgtggaacctgtcactactttgcaaataaatacagcttctggctc
actacagtcgaccagcccttccaaagcaagccctcagcagatacactcaaggcaggactc
atccgaagccatatcagcagatgtcaagtctgtatgaaaaatttatag
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