Gymnogyps californianus (California condor): 127018731
Help
Entry
127018731 CDS
T08687
Name
(RefSeq) collagen alpha-2(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
gcl
Gymnogyps californianus (California condor)
Pathway
gcl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gcl00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
127018731
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gcl00536
]
127018731
Glycosaminoglycan binding proteins [BR:
gcl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127018731
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Amnionless
TILa
Motif
Other DBs
NCBI-GeneID:
127018731
NCBI-ProteinID:
XP_050756437
LinkDB
All DBs
Position
7:complement(8802412..8915565)
Genome browser
AA seq
1496 aa
AA seq
DB search
MMAIWVQTRTFFILAALLGRFVTTKAQEEEEYDGGEDVEEIACSQNGQMYLNRDIWKPSP
CQICVCDNGAILCDEIQCQDVLECENPQVPPGECCPVCPHTTRDFDTTIGRGRKGQKGEP
GIVPPVSGIRGRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGIPGQPGDPGPPGH
PTHPGPDGLSRPFSAQMAGLDEKSGLGSQMGLMPGAVGPVGPRGPQGLQGKQGGAGPTGP
PGEPGDPGPMGPVGSRGPEGPPGKPGEDGEPGRPGQSGEPGFPGSPGPRGFPGAPGLPGL
KGHRGMKGLDGPKGEIGAAGAKGESGPTGAMGATGPLGPRGMPGERGRIGPQGAPGGRGQ
HGMPGKPGPMGPLGITGSPGFPGAPGVKGEAGPTGPRGPEGPQGQRGETGPQGPAGSQGL
PGTEGTDGSPGAKGPTGSPGTGGPPGLSGPPGSPGPQGSTGPPGIRGQPGDPGVPGFKGE
AGPKGEPGPQGPQGPIGPVGEEGKRGPRGDPGSVGPPGPVGERGAPGNRGFPGSDGLPGP
KGAQGERGPAGSSGPKGGQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGR
PGPAGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGP
PGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGE
RGEPGASGLQGEKGMAGGHGPDGPKGSPGPSGTPGDPGPPGLQGMPGERGIAGTPGPKGD
RGGIGEKGAEGTAGNDGARGLPGPIGPMGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGE
NGPTGAVGFAGPPGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPPGPPGVPGLKGG
RGTQGPPGATGFPGSAGRVGPPGPTGAPGPAGPIGEPGKEGPPGLRGDPGSHGRVGDRGP
AGPPGGPGDKGDAGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGK
QGPTGPPGDKGPPGPIGQSGATGPVGEAGPEGPAGNDGTPGRDGAVGERGDRGEPGPAGL
PGSPGGPGTPGPVGPPGDAGQRGETGSRGPMGPPGRAGKRGLPGPQGPRGDKGDNGDRGD
RGQKGHRGFTGLQGLPGPPGPIGEQGSPGIPGPFGPRGPPGPVGPSGKDGSPGPLGPIGP
PGVRGSVGEAGPEGPPGDPGPPGPPGPPGHLTAAIGDIMGHYDDAMADPLPEFTEDEAAP
DDHNKTDPGVHATLKSLSSQIETMRSPDGSKKHPARTCDDLKLCHPSKNSGEYWIDPNQG
CVEDAIKVYCNMETGETCISANPSTIPRKTWWASRSSDLKPIWYGLDMNRGSQFVYGDTA
VTQMTFLRLLSKEASQNITYLCKNSVGYMDDQTKNLKKAVILKGANDLEIKAEGNSRFRY
TVLHDSCSKRNGNVGKTVFEYRTQNVARLPIIDIAPVDIGSTDQEFGIEIGPVCFV
NT seq
4491 nt
NT seq
+upstream
nt +downstream
nt
atgatggcaatctgggtacaaacaagaacttttttcatccttgctgctttattaggccga
tttgtaaccacaaaagcgcaagaagaggaagaatatgatggcggagaagatgttgaagaa
atagcctgcagtcagaatggccagatgtacctgaacagggatatttggaagccctcacca
tgccaaatttgcgtctgtgacaacggagctattctttgcgatgaaatccaatgtcaagat
gtgctggagtgtgagaacccgcaggtgccccccggagagtgctgtcctgtgtgtccccat
acaacacgtgattttgataccaccattggtagaggaagaaagggacaaaaaggagaacct
ggaatagtgccacctgtttcaggaatacgaggccgcccgggaccagccggacctccaggc
tcacaaggaccacgaggagaacgaggaccaaagggaagacctggtcctcgtggtcctcaa
gggattgatggggaacctggtatccctggccagcctggtgaccctggtcctccagggcat
cctacccacccaggaccagatggactaagcaggccattttcagctcagatggcaggactg
gatgagaaatctggacttggtagtcagatgggactgatgcctggtgcagtgggtccagtg
ggtccaagaggtcctcaaggtctccaaggaaaacaaggtggtgctggccccacaggccca
cctggtgaacctggggatccaggacctatgggtccagttggttctcgtgggccagaggga
cctccaggcaaacctggtgaagatggtgaacctggtagaccaggacaatctggtgagcct
ggatttccaggatctccagggcctcgaggcttccctggtgctcctggtcttccaggtctc
aagggtcacaggggaatgaaaggacttgacggtccaaaaggtgaaattggagcagctgga
gcaaagggagaatccggaccaacaggtgccatgggtgcaacaggtcctctaggacctaga
ggaatgccaggagaaagaggtcgaattggaccacagggtgcccctggtggacgtggccag
catggtatgcctgggaagccagggccaatgggcccacttggcataactggttctccaggt
tttccaggtgctcctggtgtaaagggtgaagcaggtccaacgggtcctcgtggtcctgaa
ggtcctcaaggacaaagaggtgaaacaggtccacagggcccagctggatcacaaggtctt
cctggtaccgaagggacagatggttccccgggtgctaagggccctactggatctccaggc
actggaggcccccctggtttatcaggtccacccggttccccaggaccacaaggcagtact
ggcccacctggtattcgaggccagccgggagaccctggtgtcccaggtttcaagggagaa
gcaggacccaaaggtgaacctggcccacaaggtccccagggtcccattggccctgtaggt
gaagaagggaaaagaggtcctcgaggtgatccagggtcagtaggtccaccaggtcctgtt
ggagagaggggtgctcctggtaaccgtggttttccaggttctgatggcttgcctggacca
aagggtgcccaaggagagcgtggtccagcaggttcttctggtcctaaaggaggtcaggga
gatcctgggcgtcctggtgaacctggcctcccgggtgcaaggggtttgacaggaaatcca
ggtgttcaaggccctgaaggaaaacttggccccttgggtgctcctggagaagatggacgt
ccaggtccagcaggttcaataggaatcagaggtcagccaggcagcatgggccttcctggg
ccaaagggtagtagtggtgatcctggaaaacccggagaagcaggcaatgcaggtgtccca
ggacagagaggagcccctggtaaagatggtgaagttggtccttctggtcctgttggccca
ccaggtctggcaggagaaagaggagaacaaggccctccaggtcctacagggtttcagggc
ttgcctgggccaccaggtccgccaggtgagggaggaaagccgggtgatcagggtgtgcct
ggagatcctggagctgttggtccgttgggccctaggggagaacgtggcaatccaggggaa
aggggagaaccaggtgcatcaggactccagggtgaaaagggaatggctggaggtcatggt
cctgatggtccaaagggaagcccaggccctagtgggacgcctggtgacccaggcccgcca
ggtcttcaaggtatgcctggagaaagagggatcgctggaacgcctggccccaagggtgat
agaggcggcataggtgagaaaggtgctgaaggtacagctggcaacgacggggcaagaggt
ctccctggtccaataggcccaatgggtccagcaggtcccactggtgaaaagggtgaacca
ggtcctcgaggtctagttggtcctcctggctcccgtggaaaccctggttccagaggagaa
aatggcccaactggcgctgttggttttgctggtcctccgggccctgatggtcagccaggt
gtgaaaggtgaacctggagaacctggacagaaaggagatgctggatctccaggaccacag
ggtcttgctgggtctcctggtccaccgggtcctccaggtgttcctggtctgaaaggtggt
agaggaactcagggtccacctggtgctactggattcccaggatctgctggaagagttggg
cctccaggacctactggagctccagggcctgctgggcctattggtgagccagggaaagaa
ggtcccccaggtcttcgtggtgatcccggttctcatggccgtgtgggagatcgagggcca
gctgggcctcctggtggtcctggagacaagggtgacgcaggggaagacgggcagccgggc
ccagatggcccccctggtccagcaggaactactggtcaaagaggtattgttggtatgcca
ggacagcgaggggaaagaggcatgccagggctgccgggtcctgcaggtacaccaggaaaa
caaggtcccacggggccgcctggtgataaaggtcccccaggacctattggccagtcaggt
gccactggacctgtaggtgaagctggtccagaaggacctgctggtaatgacggtactcct
ggacgagatggagctgttggagaacgtggtgatcgtggtgaacctggccctgcaggctta
ccaggttccccagggggtccaggaactccaggtcctgttggccctccaggagatgcaggt
caaagaggtgaaactggttctcgaggtccaatgggtcccccaggtcgtgcaggaaaaaga
ggtttgcctggtccccaaggacctcgtggtgacaaaggtgacaacggagatcgaggtgat
agaggccagaaaggacacaggggtttcactgggcttcaaggtcttcctggtcctcctggt
cctattggtgaacagggcagtcctggcattccaggcccatttggtcctcggggtcctcca
ggtccagttgggccttccggcaaagatggaagtcctggtccgcttgggccaattgggcct
cctggtgttagagggagtgtaggagaagccggacctgagggtccaccaggtgatcctggc
cctcctggccctccaggacctccaggccatctcactgctgccattggtgacattatggga
cactatgatgatgctatggcagatccactaccagagtttactgaagatgaagcagcccca
gatgaccataataaaacagacccaggagtccatgccacactgaagtcactgagcagccag
attgagactatgcgcagcccagatggttcaaagaaacacccagcacggacttgtgatgac
ctgaagctgtgccacccatccaagaacagcggtgaatattggattgatcctaaccaagga
tgtgttgaagatgctataaaagtatactgcaacatggaaactggagagacctgtatttct
gcaaacccgtctactataccacgtaaaacatggtgggccagcaggtcgtctgacttaaag
cccatttggtacggccttgatatgaacaggggatcacagtttgtgtatggggatacagct
gtcactcagatgacattcctgcgcctcctatcaaaggaagcttcccagaatatcacttac
ctgtgtaaaaacagcgttgggtacatggatgaccagacgaagaacctgaaaaaagctgta
attctgaaaggggccaatgacctggagatcaaagcggagggaaacagccgattcagatac
actgttcttcatgacagctgttctaaacgtaatgggaatgtgggcaagactgtttttgag
tacagaacacagaacgtggcacgcttacccatcatagatattgcaccggtggacattggc
agtaccgaccaggaatttggaattgaaatcgggccagtttgctttgtgtaa
DBGET
integrated database retrieval system
