Gymnogyps californianus (California condor): 127022597
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Entry
127022597 CDS
T08687
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
gcl
Gymnogyps californianus (California condor)
Pathway
gcl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
127022597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gcl04121
]
127022597
03400 DNA repair and recombination proteins [BR:
gcl03400
]
127022597
Ubiquitin system [BR:
gcl04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
127022597
DNA repair and recombination proteins [BR:
gcl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
127022597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_jaz
zf-met
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
127022597
NCBI-ProteinID:
XP_050762187
LinkDB
All DBs
Position
15:complement(17075042..17099109)
Genome browser
AA seq
1877 aa
AA seq
DB search
MDEQDNDFKELWANLLGRAKKKAGDAEAAKRAQNRPKSTAARGKLRRGKAAAKSQNHHHL
PAAKETNLPQDLGPKEQTLVHKEDGDAVACSSGETAQGDGKRSPFPASQLSTVASECSQR
TLTVNTLSGSSQTTLSFHPATQPGTCSSPTSKIPPLAGSKMRVAELVVERMQQFKRVAPE
QLKHSTDDSLPKSVASGDFPDESQEQNPPENDTHHLPSMEHDGALALALQQETKEEALAS
LEDAGFFFCQICQKDLSAMNTTRREQHVNRCLDEMEEAQMSSSSKPLVPECPICGKQFQT
PQSRVSHLKRCAVEMDVPPKLLLQAVQLQVSTLGDTPLQCPGNNQPSRSKRKGSSKEDSK
KTQKRAKMETKDEDLLVAMAMSRSLLEQEKQEQAKSVTNVKPVAALPIKWKPGSEKKRRK
RGPTAPPPLLLQDPEKTRKRIQERVAMLLAEEVEFPPTPQLPTSRILEDESGKATWLLPL
CKTKECFLWNISALTGPYDPEAFYTAALTPPIVPWKPVQNHKPENLLPSVGSDQPKVSQQ
IQPDLSSHEPTGTEVGGQTSDESKSGPEGDGQFLSHSQKDVQTLQDLVELAREGLTLTQW
NLDVDHIQAAEQQGKELTSSDTPHSGFVPPSKEKSLLTSSCKRSSLRLLAEDFSAMVNNP
HLSDVQFQVDCGEVLYAHMFVLYARCPQAIQVVSTQGFLVEEDGNAQTRRVLLSDVTGEA
VCAFLRYLYAADADIPAEVLPQVGALAARFGVRELMAKCENSTGESQVSSGVDSEDDLIS
VRDDKDCEDRAENFQDLLKSVWVGEDEEEVAMLNHECQKEDDNGVGEQELEEIYEFAATQ
RKMVQGETEVSEGTDCSICSDTEAAQGTNQQTEEEEVKRSESASISNSFKDLRDDNDVER
SKCDSSAQEEKMQNINRCKTVSDPQTTFVPHHSEPQKWDVASHGATANEGGTVRRCEGVK
DSKSSQVSHDEADHCEKQFPSFQGDTNLNESYERLFSATQGDYCEPSPMKEVIKESGKAS
SEKHVDVNDSLVYSKSQKDLSPCRNGFCGSPPPKPYVPLFPAVSSSPASPKSERKFAREH
VSTPKQNKKEKLFPSDEIHFQKANELDTASRNENTISPAELPHIDLNKHTYVPVLSSLVI
RTQDAAAQGNKEGDVIVLSSDDEMELQEDKKSPESGSALKKMEIPGQLKCTNVEQGPEIP
KPEHNSSVTETEQRSSQVSCGITDTVHISNDVKMSTELPLSRQRDACTESKRSPNLRPEK
RLSHEMSLGTDSSWLVPDTPVLSKSRSFSTQTQVTRISSLKSPGSKLSTKNLAAGNSNHE
MTGNLVKVCETTLSDKHLPMENSVSEGSPSSSPTAGSFSKNSPPVSSADAVLLSPGHTNM
KSKCAKISFLSKPLPPCHEQSLEDKTNISVVEVEDSEKEISLPSLSSSVLLCDEPPIPVD
DCWHVEYLSPVRGNSQDSNQVSRAKASTASSPRPGPWHDQWESPVHAQEIKGSTPLRGSP
VGRRTALLCLEKSPIEACSSVGSRPSYLNSKIWDDWNGEEEEDEFPEILPLSQRLSAAAG
AWQTDPVKTPEPSCQENDKPPSTPLTPMPAYSIMETPQLKKELSRFGVRALPKRQMVLKL
KEIFQYTHQDVDSDFEDEIPSSQPPLQKSPARRSRQSKADRTAGGKRANASRAVGKRKQV
ATASSVLPVGRADGDLVGSHETGCAAPKEGTKTTHHPEGAKEQKRSSVSPERWSLAADGE
EPMLSASQESAVSSVDGSDISLGSQSSFVNGFEACAFASEEEEEELPASQAAAREEDKLE
AVRCYIRSNTALYHKILFYEPIELAELHTELKQNGIKISKAKLLDFLDAHCITFTTAGAR
KEKEQKRKGNKKQRRRY
NT seq
5634 nt
NT seq
+upstream
nt +downstream
nt
atggatgaacaggacaatgattttaaagagttgtgggcaaatcttttgggtagagcgaag
aaaaaagctggggatgctgaagcagcaaagagggctcagaacaggccaaagagcactgca
gcaagaggcaaattaagaagaggcaaagctgctgctaagagccaaaaccatcatcactta
ccagcagcgaaggaaacaaacttgcctcaagatttgggtccaaaggaacaaacattggtg
cacaaagaagatggtgacgctgtggcctgtagtagtggtgagactgcacaaggggatgga
aagagaagccctttccctgccagccagctgagtacagtggccagtgagtgtagccagagg
actctgacagtaaatactctgagtggctcttcccagactacattatccttccatcctgct
acacagccagggacctgctcttcacccacctcaaagataccgccgctcgcagggtccaag
atgcgggtagcagagctggtagtggaaagaatgcagcagttcaagagagtggcacctgag
cagctaaaacacagcacagatgatagtttgccaaagtctgtagccagcggggatttccct
gatgaaagccaggagcagaacccaccagagaatgatacccaccatcttccatccatggag
catgacggtgctctggctttggctcttcagcaggaaaccaaagaggaagccctggcaagc
ctggaggatgcaggcttctttttttgtcagatctgccagaaggatctctcagctatgaac
acaacgcgacgagagcagcatgttaacaggtgcctggatgagatggaagaagcacagatg
tcgtcctccagcaaaccactggtccctgaatgtcccatctgtgggaagcagttccaaacc
ccacagagccgagtcagtcacttgaaacgctgtgctgtcgagatggatgttcctcctaag
ctgcttcttcaggcggtgcagttgcaggtgtccacgcttggtgatacacctcttcagtgt
cccggtaacaatcaaccaagcaggtcaaagcgaaaaggctcctccaaagaggactcaaag
aaaacgcagaagagggccaaaatggagactaaggatgaagatttgctggttgctatggca
atgtcacgctccctgttggagcaagaaaagcaggaacaagcaaaatcagttacaaatgtg
aaaccagtggctgctttgccaatcaaatggaagccaggatcagagaaaaaacggcgtaaa
agaggcccaactgcacctccaccattactgcttcaggacccggagaagacccgcaaaagg
atccaagagcgagtagctatgctgcttgcagaagaggtggaattccctcccacccctcag
cttcccactagtaggattttggaggatgaatctgggaaagcaacctggcttttgccattg
tgcaaaaccaaggagtgctttttatggaatatcagtgctctgacgggaccctatgaccct
gaagcattctacactgctgcattaacccctccaattgtaccttggaagcctgtgcagaat
cataagccagagaaccttctgccatcggtgggatctgatcagccaaaagtatcccagcaa
attcagcctgacctcagttctcatgagcccactggcacagaggttggaggccaaacttct
gatgaatccaagtcaggccctgaaggagatggacagtttttatctcacagccagaaggat
gttcagaccctgcaggacctagttgagttggccagggaaggacttacccttactcagtgg
aaccttgatgttgaccacattcaggcagcagagcagcaaggaaaagaactgacttccagt
gatactccacatagtggctttgtgcccccatccaaagagaagagcctgctgacgagcagc
tgtaaaagatcctctctcaggttgctggctgaagatttcagtgcaatggtcaacaacccc
cacttaagtgatgtccagttccaggtggactgtggggaagtcctttatgcccacatgttt
gtgttgtatgcacggtgtccacaggccattcaagttgtaagtactcaagggttcttagtg
gaggaggatgggaatgcgcagacacgccgtgtgctgctgagtgacgtgacaggagaggcg
gtgtgtgcattcctgcgatacctttatgctgctgatgctgacatccctgctgaggtgctg
ccccaggtgggggctctggctgccaggtttggtgtgagggaactgatggcaaagtgtgaa
aacagcactggagagagtcaggtgtcttctggagtggattcagaagatgatcttatctct
gtgagggatgacaaagattgtgaggacagagctgagaacttccaagacctcttgaagtca
gtgtgggtgggtgaagatgaagaagaagtagctatgctgaaccacgaatgccagaaggaa
gatgacaatggggtgggtgaacaggagctggaggaaatctatgagtttgctgcaactcag
agaaagatggttcaaggtgaaacagaggtcagcgagggaacagactgcagcatctgcagt
gatactgaggcagcccaaggtacaaaccagcaaactgaggaggaagaggtaaagagatct
gaatctgcttcaataagtaacagcttcaaagatttgagggatgacaatgatgtggaaaga
tctaaatgtgactcgtctgcacaagaagagaaaatgcagaatataaataggtgcaagacc
gtgagtgatccacagaccacttttgtgcctcaccacagtgaacctcaaaaatgggacgta
gcatcccatggtgccaccgctaatgaaggagggactgttaggagatgtgaaggtgtgaag
gattccaagtcatctcaggtctcacatgatgaggcagatcactgtgaaaaacagtttcct
agcttccagggtgatactaatttaaatgaaagttatgaacgcttgttttctgcaactcag
ggagattactgtgagccttccccaatgaaagaagttatcaaagagtcaggaaaggcttca
agtgaaaaacacgttgatgttaatgattcgcttgtgtacagcaagtcacaaaaagacctc
tctccatgtaggaatggtttttgtgggagtcctcctcccaaaccttatgttccccttttt
cctgctgttagctcttcacctgcatctccaaaatcagagaggaagtttgccagagaacac
gtgtcgacaccaaagcaaaacaaaaaggaaaaattattcccatctgatgaaatacacttt
cagaaagccaacgagctggatacagcatcaagaaatgagaacacgatttctccagcagag
cttccccacattgatttaaacaagcatacgtatgtcccagtgttgtcatcactggtcatc
agaactcaggatgctgcagctcaggggaacaaggagggtgatgttattgttttatcttct
gatgatgaaatggagttacaagaagacaagaagtcgccagaatcaggctctgctctgaag
aaaatggaaatccctgggcaactgaaatgtacaaacgtagaacaaggtcctgagatacca
aaacctgaacataactcatcagtcactgaaacagagcagagatctagccaggtctcatgt
ggcattacagatacagtgcatataagtaatgatgtaaagatgtccaccgaattgcctctc
agcagacagagagatgcttgtacagagagcaaacggagtccaaacctgaggcctgaaaaa
aggctcagtcatgaaatgtctttaggtacagacagctcctggctagtgccagacacaccg
gttctgagcaaaagcagaagtttctcaacacagactcaggtcacacgtattagttctttg
aagagtccaggatctaaactcagcacaaagaacttagcagcaggtaatagtaaccatgaa
atgactgggaatttagtgaaagtttgtgagacaacgttgtcagacaaacatttgcctatg
gagaactcagtcagtgaagggagcccttccagcagcccaacagcaggatcattttccaag
aactccccaccagtttcttcagcggatgcagttctcctctcccctggccacaccaacatg
aaaagcaaatgtgccaagatctcatttttatccaaacctctgcctccgtgccatgagcag
tcattggaagataaaacaaatatcagtgtggttgaggtagaggacagtgaaaaggaaata
agtctgccttctttgagtagtagcgtcttgctttgtgacgagcccccaatccccgttgat
gactgctggcatgttgaatatctgtcaccagtcagaggtaacagccaggactccaaccag
gtcagccgtgcaaaggccagtactgccagcagccccagacctggcccttggcatgaccag
tgggagagcccagtccacgcgcaggaaattaagggcagtacccctctgcgaggaagtcct
gttggcagaagaacagctttgctctgtcttgaaaagagtcctattgaggcatgttcatca
gtgggcagtagaccgagttacctgaactccaaaatctgggatgactggaatggagaagag
gaggaagatgaatttccagagatccttcctctgtctcagaggttgtcagctgcagcaggt
gcctggcagacagatcccgtaaagactcctgaaccttcctgtcaggagaatgacaagcct
cccagcactccactgacaccaatgccagcttactccatcatggagaccccacagctgaag
aaggagttgagcagatttggagttcgtgctctcccaaaacgccagatggtgttgaagctg
aaggagatattccagtatactcaccaggacgtggactctgactttgaggatgaaatccca
tcttcccagcctcccctacagaagtccccggccagacgctctaggcagtcaaaggcagac
cggactgcaggtggaaagcgtgccaatgcctcgagggctgtgggcaaaaggaagcaggtt
gctacagcttcttcagtgctccctgtggggagggctgatggtgaccttgttggatcccat
gaaacaggctgtgcagcgcccaaggagggaactaaaacgacacatcacccagaaggagcc
aaagagcagaaaaggtcatctgtatctccagagagatggtctctggcagctgatggtgag
gaaccaatgctctcagcatctcaggagtctgcagtttcttcagtggatggaagcgacatc
tctcttggttcacagagttctttcgtgaatggatttgaagcctgtgcttttgcatccgag
gaggaggaagaggagcttccagcatctcaggcagcagctcgggaggaagataagctggag
gcagtaaggtgctacattcgttcaaacacagccctgtaccacaagattctcttttatgag
ccaattgagctggctgagctgcacacagagctgaaacagaacggcattaaaatttccaag
gcaaagctgctggactttttagatgctcactgtatcacatttaccacagccggagcccgg
aaggagaaggaacagaaaagaaaggggaacaaaaaacagaggagacgatactga
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integrated database retrieval system
