Geobacter sp. M18: GM18_2578
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Entry
GM18_2578 CDS
T01421
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
geb
Geobacter sp. M18
Brite
KEGG Orthology (KO) [BR:
geb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
geb03032
]
GM18_2578
03400 DNA repair and recombination proteins [BR:
geb03400
]
GM18_2578
Enzymes [BR:
geb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
GM18_2578
DNA replication proteins [BR:
geb03032
]
Prokaryotic type
DNA Topoisomerases
GM18_2578
DNA repair and recombination proteins [BR:
geb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GM18_2578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
zf-C4_Topoisom
Toprim
RNA_POL_M_15KD
DNA_ligase_ZBD
Toprim_4
zinc_ribbon_2
zf-ribbon_3
Motif
Other DBs
NCBI-ProteinID:
ADW14029
UniProt:
E8WQN5
LinkDB
All DBs
Position
complement(3076603..3078942)
Genome browser
AA seq
779 aa
AA seq
DB search
MSQNLVIVESPAKAKTIEKFLGPEYKVLASFGHVRALPSKQGSVDVEHEFEPKYAVLPES
KKHIDAIKKEMKGITSLLLATDPDREGEAISWHLLAALGLDGKKKASFDIKRVVFHEITK
DAIVHAVQHPRGISVDLVDAQQARSILDYLVGFTLSPFLWKKIRYGLSAGRVQSVALRLI
CEREKEIQAFKEQEYWTIGAKLETAKKQALTAALVEAEGKKLSKFDIPNQEAAFRLFGLL
GGKEFPKQEGEEGSAPLVVKAPVNPEYRVDKVTKSERKRQPSPPFTTSTLQQEAARKLGF
SAKKTMSTAQKLYEGIDVGEGAVGLITYMRTDSVALSNVALEDARQLITSLYGKEYALEK
PRFFKNKSKNAQEAHEAVRPTYISKTPIEVKKFLTSDQFKLYDLIWKRTVACQMAEALLD
QTSVEITAGEGFRFRVAGTVIRFAGFMKLYIEGVDDEAEDKEKEGMLPPLKEGDILKLQQ
LLPEQHFTQPPPRYTEATLVKTLEEYGIGRPSTYASIMNTLTERKYARLDKKRFFPEDVG
MVVSDLLTNHFNQYVDYNFTANLEEQLDMVSRGEKQWRPLLHEFWGPFINLLKLKEGEVS
KSDLTTEATDEVCPECGKPLVVKLGKFGKFYACTGYPECRYIRPLDKETGEVVEPVVSEE
LCDKCGSHMLVKDGRFGKYLACSAYPNCKNIQPLVKPKGTGITCTACGKGELIEKKSRFG
KLFYSCNRYPECKFALWDQPVQKPCPKCGFPLLVKKVYKREGEFLKCPKEGCDYQSNKE
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaaaatcttgtcatagtcgagtctcccgccaaggcgaagaccatagaaaaattc
ctcggccccgagtacaaggtgctggcgtcgttcggccacgtgcgcgcgcttcccagcaag
caggggtcagttgacgtcgaacacgagttcgagccgaaatacgcggtccttcccgagagc
aagaagcatatagacgccatcaagaaggagatgaaggggatcacctcgctgcttctggcg
acagaccccgaccgcgagggagaggccatctcctggcaccttctggcggcgctggggctc
gacgggaagaaaaaggcttccttcgacatcaagcgcgtggtgttccacgagatcaccaag
gacgccatcgtgcacgccgtgcagcacccgcgcggcatctcggtcgacctggtcgacgcg
cagcaggcccgctccatcctcgattacctggtaggcttcaccctctccccgtttctgtgg
aagaagatccgttacggcctctccgccggccgcgtgcagtcggtggccctgaggctcatc
tgcgagcgggagaaggagatccaggcattcaaggagcaggagtactggaccatcggcgcg
aagctcgagaccgccaagaagcaggccctcaccgccgcgctggtcgaggcggaagggaag
aagctttccaagttcgacatcccgaaccaggaggcggccttccggcttttcggacttctc
ggtggcaaggagttcccgaagcaggagggtgaggaggggtctgcgccgctcgtggtcaag
gcgccggtcaatcccgagtaccgggtcgacaaggtcaccaagagcgagagaaagcgtcag
ccctcgccgccgttcaccacctccaccctgcagcaggaggcggccagaaagcttggtttc
tccgccaagaagaccatgtccaccgcgcagaagctctacgagggtatcgatgtcggcgaa
ggcgcggtcggtctcatcacctacatgcgtaccgactccgtcgcgctctccaacgtggcg
ctcgaggacgcgcggcagctgatcacctcgctctacggcaaggagtacgccctggagaag
ccccgcttcttcaagaacaagtcgaagaacgcccaggaggcccacgaggcggtccgcccg
acctacatctccaagaccccgatcgaggtgaagaagttcctcacctcggaccagttcaag
ctctacgacctgatctggaagaggaccgtcgcctgccagatggcggaggcgcttttggac
cagacctcggtggagatcaccgcgggcgaaggtttccgtttccgcgtagccggcaccgtg
atccgcttcgccggtttcatgaagctctacatcgaaggcgtggacgacgaggcggaggac
aaggagaaggaagggatgctcccgcccttgaaggagggggatatcctgaagctccagcag
ctcctccccgagcagcacttcacccagccgccgccgcgctacaccgaggcgaccctggtg
aagaccctggaggagtacggcatagggcgcccgtccacctacgcctcgatcatgaacacg
ctcaccgagcgcaagtacgcgcgcctggacaagaagcgcttcttccccgaggacgtcggg
atggtggtctcggacctgctgaccaaccatttcaaccagtacgtcgactacaacttcacc
gcaaacctcgaggaacagctcgacatggtgtcgcgcggcgagaaacagtggcgtccgctt
ttgcacgagttctggggtccgttcatcaacctgctgaagctgaaggaaggggaggtgagc
aagtccgacttgaccaccgaagcgaccgacgaggtctgccccgagtgcggcaagccgctg
gtggtgaagttggggaaattcggcaagttctacgcctgcaccggctacccggaatgccgc
tacatccgccccctggacaaggagaccggcgaggtggtcgagccggtggtctccgaggag
ctctgcgacaagtgcggcagccacatgctggtgaaggacggccgcttcggcaagtacctc
gcctgctcggcgtaccccaactgcaagaacatccagccgctcgtcaagcccaaggggacc
gggatcacctgcaccgcctgcggcaagggggagctgatcgagaagaagtcccgcttcggc
aagctgttctactcctgcaaccgctaccccgagtgcaagttcgccctctgggaccagccg
gtgcagaagccctgccccaagtgcggattcccgctcctggtgaagaaggtctacaagcgc
gagggggagttcctcaagtgccccaaggaaggttgcgactaccagagcaacaaggaataa
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