Geobacter sp. M18: GM18_4516
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Entry
GM18_4516 CDS
T01421
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
geb
Geobacter sp. M18
Pathway
geb00300
Lysine biosynthesis
geb00470
D-Amino acid metabolism
geb01100
Metabolic pathways
geb01110
Biosynthesis of secondary metabolites
geb01120
Microbial metabolism in diverse environments
geb01230
Biosynthesis of amino acids
Module
geb_M00527
Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
geb00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
GM18_4516
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
GM18_4516
Enzymes [BR:
geb01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
GM18_4516
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
ADW15919
UniProt:
E8WL15
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All DBs
Position
complement(5268544..5269797)
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AA seq
417 aa
AA seq
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MHHFQYKGDELFAEEVAIKDIVAKTGSPVYIYSKATLERHFKAMDDAFAGAPHTICYSVK
ANSNLAVLKTFINLGSGVDIVSGGELYRALAAGVDPKKVVYSGVGKRDDEIAYALETGIL
LFNVESEQELDRINEVAGRLNKKAGIAIRVNPDVDPQTHPYITTGLKKAKFGINIERALG
QYQRAKELSNLEILGIDCHIGSQLTKVSPFVDAIKKLKRLLKGVREMGIEVKYLDLGGGL
GIQYNDEAPPLPADYGSSILEETKDLGLHLLFEPGRNLVGNAGILVGTCLYTKKGEEKNF
VIVDAGMNDLARPALYGSFHGVRPVFRNQDGVIEGDIVGPICESGDFLVKDREIPNFQQG
DQIAFMSAGAYGFTMSSNYNSRPRVAEVMVDGVKFEVVRERETLEDLVKGERIPSFL
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgcatcactttcaatacaagggtgacgagctcttcgctgaagaggtcgcgataaaagac
atcgttgctaaaacaggaagcccggtctacatctactccaaggcaaccctcgagaggcac
ttcaaggcgatggacgatgcctttgctggcgcgcctcacaccatttgctactcggtcaag
gccaactccaaccttgcggtgctcaagaccttcattaacctgggcagcggcgtggacatc
gtatcgggaggagaactctaccgtgcgcttgccgccggtgtcgatcctaaaaaagtggtt
tattccggcgtgggaaagagggacgacgagatcgcctacgcactggaaaccggcatcctc
ctcttcaacgtggagtccgagcaggaactggaccggatcaacgaggtggcggggcgtctg
aacaagaaggcgggcatcgccatccgcgtcaatcccgatgtcgatccgcagacccaccca
tacatcaccaccggcctcaagaaggccaagttcggtatcaatatcgagcgcgccctggga
cagtaccagcgcgccaaagagctgagcaacctggagatcctggggatcgactgccacatc
ggcagccagctcaccaaggtttccccctttgtcgatgccatcaagaagctgaagcgcctg
ctgaagggcgtcagggagatgggcatcgaggtgaagtacctcgacctgggtggcggcctc
ggcatccagtacaacgacgaagcgccgccgctccctgcggactacggttcctccatcctg
gaggagaccaaggacctcgggctgcatctgctcttcgagccagggaggaacctagtaggc
aatgccggcattctggtcggcacctgcctctacactaaaaagggcgaggaaaagaacttc
gtcatcgtcgacgcggggatgaacgacctggcccgcccggcgctgtacggctccttccac
ggtgtcaggcccgtgttcagaaatcaagacggcgtcatcgagggggacatcgtcggcccg
atctgcgagtccggggatttcctggtcaaggaccgcgaaataccgaacttccagcagggc
gaccagatagcgttcatgtccgcgggggcctacgggttcaccatgagcagcaactacaac
agccgcccgcgggtcgccgaggtgatggtcgacggagtcaaattcgaggtggtgcgcgag
cgcgagacgctggaagacctggtcaaaggcgaacgcatcccgtcgtttctctga
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