Geobacter sp. M21: GM21_0109
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Entry
GM21_0109 CDS
T00933
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gem
Geobacter sp. M21
Pathway
gem03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GM21_0109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gem03400
]
GM21_0109
Enzymes [BR:
gem01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GM21_0109
DNA repair and recombination proteins [BR:
gem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GM21_0109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ACT16195
UniProt:
C6E8Q6
LinkDB
All DBs
Position
complement(132915..135533)
Genome browser
AA seq
872 aa
AA seq
DB search
MGLEEYQRKRNPERTPEPPAGEGKSDRSLRFVVHMHAASHLHYDFRLELDGVLKSWAIPK
GPSLDPSVKRLAMMVEDHPYDYGDFEGVIPKGNYGAGEVIVWDAGSYEAPGAADLEQNMR
LLREGLKKGDLKFVLSGRKLNGEYALVRIKGDKENTWLLIKKNDRYASAEDVTLQDRSVV
SGVTIEEVRAGRKPQAPAATAEAAEPVGPVGPVGPAAPMPHRLTPMLARSAAEPFDDPDW
LFEIKLDGYRAIAEIEDGEALLYSRNNLSFNKRFPAIVQSLASLPVTAVLDGEVVALDEK
GRSYFQLLQNNRRTGEGNIYYYAFDLLYVDGEDLRAEPLEARKERLRSLLPELPWVRFGD
HIREYGRQFFELARENNLEGILAKRADSRYLAGRRSGDWLKIKIRLQQEAVICGFTQPRG
SRKGLGSLVLGVYENDELVYIGLTGGGFDDAGLKEMYAALQLLVQPESPFRQQVKTSMPA
TWVKPVLVCEVEFAEWTDENVMRQPIFLGLREDKDPRSVQREIFPAEVQPPVHRARTDHE
EDADEPAAGEKVPAEETVATANPSGNKGSKKGEVNLVIDGQRLTLTNLDKVFWPEEGYTK
GDVIDYYRKMARVILPYLVDRPESMYRTPHGITEGGFYQKETGDLIPPWITAREIYSKHV
DKNIKFLVCQNEATLIYMANLGCIEINPWLSRLQQLNHPDYLVIDLDPEDIAFEKVVETA
LAVHEVLESAGAVSFPKTSGATGIHIYVPLGARYDYDTAGGFAKLVATLAHHKVPGFTSL
LRSPRQRQKKVYLDFLQNKPGQTLAAPYSIRPRPGATVSTPLRWEEVKPGLDPRQFTIDT
IGKRLEQVGDLFQGVLGPGIDMEQCLERLQNG
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgggtctggaagagtatcagcgcaaaaggaatccggagaggacgccggagccgccggcc
ggcgaggggaagtcggatagatctttgcggttcgtggtgcacatgcacgcggcctcccat
ctgcattacgacttcaggctggagctcgatggcgttctgaagagctgggccatccccaag
ggaccctcgctggacccatcggtgaaaaggctcgccatgatggtggaggaccatccctac
gactacggcgacttcgagggggtcatccccaaggggaattacggggcaggcgaggtgatc
gtctgggacgctggaagctatgaagcgccgggagcagccgatctggagcagaacatgcgg
ctgctgcgcgagggtctgaagaagggagacctgaagttcgtgctctccggccggaaactg
aacggggaatacgccctggtgcgcatcaagggggacaaggagaacacctggcttttgatc
aagaaaaacgaccggtatgcctcggccgaggacgtgacgctgcaggaccgttccgtggtc
agtggggtcaccatcgaggaggtgagggcggggaggaagccgcaggcgccagcggcaacc
gcggaggccgcggaacctgtcggacctgtcggacctgtcggacctgccgctccgatgccg
caccgccttacaccgatgctggcccgctccgcggccgagcccttcgacgatccggactgg
ctcttcgagataaaactcgacggttaccgcgccatcgccgagattgaggacggcgaggcc
ctcctttattcgcgcaacaacctctccttcaacaaacgcttccccgcaatcgtccagtca
ctggcttccctgccggtcacggcagtgctggacggcgaggtggtggccctcgacgaaaag
ggacgctcttacttccagctcttgcagaacaaccggcgcaccggagaggggaacatctac
tactacgccttcgacctcctctacgtcgacggcgaggacctgcgcgccgaaccgcttgag
gcacgcaaggagagacttcgctccctgctccccgaacttccctgggtccgcttcggcgac
catatcagggagtacggcaggcagttcttcgagctcgcccgtgagaacaacctggagggg
atcctcgccaaaagggcggacagccggtatttagcggggagaagaagcggcgactggctg
aagataaagatacggctgcagcaggaggcggtcatctgcggattcacccagcccaggggg
agcaggaaaggattgggctccctggtgctgggggtctacgaaaacgacgagttggtttac
atcgggcttaccggaggggggttcgacgacgcgggattgaaggagatgtacgccgctttg
cagctgctcgttcagccggagtcccctttccggcagcaggtgaagaccagcatgccggcc
acctgggtcaagccggtgctggtctgcgaggtcgaattcgccgaatggaccgacgagaac
gtcatgcgccagcctatcttcctggggcttcgggaggacaaggacccccggtccgtgcag
cgtgagatctttcccgccgaggtccagccccctgtccaccgtgcgcggacggatcatgag
gaggatgctgatgagccggcggcaggggaaaaggtgcctgcagaggagacggttgccacg
gccaatccttccggcaataaaggctcgaagaaaggggaggtgaacctcgtcatcgacgga
cagcggctcaccctcaccaacctggacaaggtcttctggccggaggagggatacaccaag
ggggacgtcatcgactactaccgtaagatggcgcgggtgatactcccctacctcgtggac
cgcccggagtcgatgtaccgcaccccgcacggcatcacggaaggagggttctaccagaag
gagacgggcgacctgatccccccctggatcaccgcccgggaaatctattccaagcacgta
gacaagaacatcaagttcctggtctgccagaacgaagcgacgcttatctacatggccaac
ctggggtgcatcgagatcaacccctggctgtcgcggctgcagcagctcaatcatcccgat
tacctggtgatcgacctggaccccgaggacatcgccttcgagaaggtggtcgagaccgcg
ctcgccgtgcacgaggtcctggagagcgcgggcgcggtcagtttcccgaagacctccggc
gccaccggcatccacatctacgtcccgctgggagcccgctacgactacgacacggcgggg
ggcttcgcgaagctggtggcgacgctcgcgcaccacaaggtccccggcttcaccagcctc
ttgcgcagcccgaggcagcgccagaaaaaggtgtacctcgacttcctgcagaacaagccc
ggccagaccctcgccgccccctacagcatccgcccccgccccggggcgaccgtttccacc
ccgctcaggtgggaggaggtgaagcccggtctcgacccgcgccagttcaccatcgacacc
atcgggaagcggcttgagcaggtcggcgacctgttccaaggcgtgctcggccccggtatc
gacatggaacagtgcctggagcgactgcaaaacgggtag
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