Geotalea daltonii: Geob_0336
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Entry
Geob_0336 CDS
T00846
Symbol
ligD
Name
(GenBank) DNA ligase D, ATP-dependent
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
geo
Geotalea daltonii
Pathway
geo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
geo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Geob_0336 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
geo03400
]
Geob_0336 (ligD)
Enzymes [BR:
geo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Geob_0336 (ligD)
DNA repair and recombination proteins [BR:
geo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Geob_0336 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ACM18707
UniProt:
B9LYX5
LinkDB
All DBs
Position
complement(396258..398747)
Genome browser
AA seq
829 aa
AA seq
DB search
MTLDDYRKKRDFDRTPEPQGRAGPSEPALRFVVQKHAASHLHYDLRLELDGVLKSWAVPK
GPSLDPAVKRLAMMVEDHPFDYRNFEGIIPAGNYGAGAVIIWDEGTCHAYGTEERSESER
ILRQGLAKGDLKFILHGHKLKGRFALVKIRSGKGNSWLLVKKDDEHATAADITRHDRSVV
SGRRLDELGPEGEEPVMADMPGEAAPMPHNVKPMLATLVKDAFDHPDWVFEIKLDGYRTI
AEISAGSVLLYSRNLLPFNNRFPTIAAALAGLGREAILDGEVTAMDENGRSDFQLLQNHD
RTGEGSILYFIFDLLYLDGRDLRNLPLLTRKTLLQEILPDLPQVRYCEHIGETGIAFFQA
AQDNGLEGIVAKLADSRYETGKRSSAWLKVKATLRQEAIICGFTEPRGSRKKFGTLVLGA
YDKGELVYIGTSGGGFDEASLNELHDMLLPLVQGDSPFKTRAATRMPAQWVKPVLVCEVS
FSEWTSDGVMRQPVFLGLRQDKDPVTIIRETFPGPMAAPPPSAEKAGLAEKELTIGSRRL
KLTNLDKVFWPAEGYTKRDVIDYYRTISPYLLPHLRDRPESLYRTPNGIEEAGFFQKDVR
DMVADWPLTEAIYSESQHKTITFLICQDEESLIYMANLGCIEINPWLSRLGSLDNPDYLV
IDLDPEEIGFEKVVETALAVKEVLDRAGAVGFPKTSGATGMHIYVPLGARYDYETAGRFA
HLIATLANHLVPDFTSLERSPAKRQGKVYLDFLQNKRGQTLAAPYSIRPRTGATVSTPLY
WSEVAPGLEPRDFTIRTVPRRIEKTGDIFVRVLGPGIHMERCIETLERL
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgaccttggacgactaccgaaagaagcgcgatttcgatcgtaccccggagcctcaaggg
agagcaggcccatcggagccggccctccgctttgtcgtgcaaaaacacgccgcgtcccac
ctgcactatgaccttcgcctggaactggacggggtgctgaagagctgggcggtgcccaaa
ggaccgtccctcgacccggcggtgaaaaggctggccatgatggtagaggaccatcccttc
gactacaggaatttcgaggggatcattccggcaggcaactacggtgccggcgccgtaatc
atctgggatgaggggacctgccacgcctatgggacggaggagcgtagcgaaagcgaacga
atcttgcgccaggggctggcaaagggagatctgaagttcattctccacggccacaagctc
aagggcagatttgccctggtcaagatccgaagtggaaagggcaattcctggctgctggtt
aaaaaggacgatgaacatgccacggcggcagatatcacacggcatgaccggtcggtggtc
tcggggcgaaggctggatgaactggggccggaaggggaagagccagtcatggccgatatg
cccggcgaagccgcacccatgccccacaacgtcaagcccatgctcgccacgctggtgaag
gatgctttcgaccaccccgactgggtcttcgagatcaagctggatggttaccgcaccatc
gccgaaatctctgccgggtcggtgctcctctattcccgcaatctgctccctttcaacaac
aggtttcccaccattgccgccgcccttgccggattaggtagagaggccatccttgatgga
gaagtgacggccatggatgaaaacggcaggtccgatttccagctgctgcagaaccatgac
cgcaccggggaaggatcgatcctttacttcatcttcgatctcctctaccttgacggccgc
gatttgcgcaacctgccgctccttacccgaaagaccctcctgcaggaaatacttcccgac
ctcccccaggtgaggtattgcgaacatatcggtgaaaccggcatcgccttctttcaggcc
gcgcaggataacggcctggagggaatcgtcgccaaactggcagatagtcgctacgaaacg
gggaaaagaagcagtgcatggttaaaggtcaaggctacgctccggcaggaggccatcatc
tgcggctttacggagccaaggggaagccggaaaaaattcggcaccctggtgctgggtgcc
tacgacaagggagaactggtatacatcggcaccagtggcggcggctttgacgaggcgagt
cttaatgaactccatgacatgctgctgccgttggttcagggggactctccattcaaaacc
agggccgcgacaaggatgccggcccaatgggtgaagccggtactggtctgcgaagtctcc
ttttccgaatggaccagcgatggcgtcatgcggcaacctgtctttctcggcctgcgtcag
gacaaggacccggtgactataatccgggaaacatttcccggtcccatggcggcgccacct
ccgtccgcagaaaaagccggtctggcggaaaaagaactgaccatcggcagcaggcggctt
aagctgaccaacctggacaaggtcttttggcctgcagaaggctacactaaaagggacgtc
attgactattaccgcacgatttcaccctacctgctcccccatctgcgtgaccgccccgag
tccctctaccgcacccccaacggcatcgaggaagcagggtttttccagaaggacgtcagg
gacatggtagcggactggccgttgaccgaggccatatactccgagtcacagcacaaaacc
atcaccttcctcatctgtcaggatgaagaaagccttatctacatggccaatctggggtgt
atcgagatcaatccctggctctcccggctggggagcctggataacccggactacctggta
attgacctggaccctgaggaaatcggcttcgagaaagtagtggaaacggccctggcggta
aaagaggttctggaccgggccggggccgtgggctttcccaagacctccggcgccaccggc
atgcatatctatgttcccctcggagccaggtacgactatgaaacagcagggcggttcgcc
cacctcatcgccacccttgccaaccatctggtgccggatttcaccagcctggaaaggagt
ccggccaagagacagggaaaggtctatcttgattttctgcagaacaagcggggccagacc
cttgccgctccttacagcatccgccccagaacgggagcaacagtttccacccccctttac
tggagcgaggtggcgccggggctggaaccgcgggattttaccatcagaaccgtgccgcgg
cgcattgaaaaaacgggcgatatcttcgtccgtgtgctcggccccggcatccatatggaa
cgctgcattgaaacactggagcgtttgtaa
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