Gemmata sp. SH-PL17: VT84_22835
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Entry
VT84_22835 CDS
T04358
Symbol
sigE_41
Name
(GenBank) ECF RNA polymerase sigma factor SigE
Organism
ges
Gemmata sp. SH-PL17
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
HEAT_2
Sigma70_r4
DUF134
Motif
Other DBs
NCBI-ProteinID:
AMV27256
UniProt:
A0A142XJU9
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Position
5401230..5404433
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AA seq
1067 aa
AA seq
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MPRSAVALVRFAAPPTSRTTDGQLLRMFVAARTDDAFAELVRRHGPMVLAVCHRVLANPH
DAEDAFQAVFLVLARKAGAVRGSNVAGWLYSVAVRTARGVRIMRDRRKHVVASQSARISA
PTIPDDTLVVTEQAAIIDEELAKLPELLREALVLCELHGLSRRQAALELGIAEGTLSSRL
AAAKRKLAERLSARGVTATAALSMLLSSATVSAGLLRTTTAAVRGAAGSVANAAAATVLK
GMLFDQLRSVALTTVLLATVVCGGYAMTAAPGSPPEATPTAPAPRLAEDPAAPLVKQLGS
EDFNEREVADKELRKLGLKAEAALKVGLKAENPEVRARSAAILTAVRKSALEELAKTFDP
KADGEPTHPVWKRYRAIAGNTPASRELFALIVKHADWLHRLGTAETGPESAEQQYREAMV
QMGRHFLGNMRVFFEIPVWPCDYGQETAYLMLLGSYPGTEKARSKCVGDEAELFLHGEGR
IHFARGLELGLQGKTLEQSPKFRPDTVDAVPGTNRVFGKLLASWLTHRTEPAVIYCALEL
AVKWRTADVLPAARTIAADKERGPDARCAALHAVAQFGTIADLPLFAPLYDDPTGLVVPP
PPSIGLGPRSRRMQVRDHAVGLALLLCDRDPFEFGFPYAQNRFARENGRPVVAVYVGEPF
GFPNEEARTAAHTKARAFLDKQKDAPKPDPAHMKLIERLGSEDFAEREAAHKQLKELGSK
ARAALEAGIKSGNAEIVKRCRELLDQLARAEFDATHWPRFAKVIGDDKPSRALFERIRSL
PRNVELLDAVAANPNAAGKHYHDRWAELNKTARVPIGVGSFQLVAAPLADVVGWMYLGTF
PGAEGAFNTSHSIDFLPGGKHSNDAIAAALKDKTVAPAVRQLVGKWTAARVDYTGRAYGF
QLALDFGIEEVLSAARETVRAKVKDDPYPGNTAQNIRLAILVVGKLGSKDDLPLLEVHSA
NDTQCGVFLHDPPEKPGEPVFRIYRLAIEGQDTTIQVRDVSTAMRLHLLGQNPDDFGFYW
RWPHGSDAGKRMEPDNRFSPYSIGFLRKTDRTAAHKKAQEWFDKQKK
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgccccgctccgcagtcgcgctcgtgcgattcgccgctccgcccacgtctcgaacgacg
gacgggcagttgctccgcatgttcgtagccgcgcgcaccgatgacgcatttgccgagttg
gtccggcggcacgggccgatggtgctcgcagtgtgtcaccgggtgctcgcaaacccgcac
gacgccgaagacgccttccaagccgtgttccttgtactggcccgcaaagcgggcgcggtt
cgcgggtcgaacgtcgcggggtggctctacagcgtcgcggtgcgaaccgcacgaggagtg
cgcatcatgcgggaccggcgaaagcacgtcgtcgcgagtcagagtgccagaatcagcgcc
cccacgattccggacgacaccctcgttgtcacggagcaagcggccatcatcgacgaagaa
ctggcgaagctccccgaactgctgcgcgaagcgctcgtgctgtgcgaactgcacgggctg
tcccgcagacaggccgcgctcgaactcgggatcgccgaagggacgctctccagccggctc
gctgcggcaaagcggaagctcgcagaacgcctctcggcccgtggagttacggccaccgcc
gcactaagtatgctgctctcttccgccacagtttcggccggcctgctccggaccacgacg
gccgccgttcgcggcgcagcgggaagtgtggcgaacgcggccgcagccacggtcctcaag
gggatgctgttcgaccaactccggtccgttgcgctcactaccgtgctactcgccaccgtt
gtgtgcggtgggtacgcgatgaccgccgcgcccggttccccgccagaagcaacgcccacc
gctcctgcaccacgactcgccgaagaccccgccgcgccactcgtgaagcagctcggcagc
gaagacttcaacgagcgcgaggttgcagataaagagctgcgcaaactcggactcaaagcc
gaagccgcactcaaagtcggactgaaggccgagaaccccgaagtccgggcgcgttctgct
gcgatcctcaccgccgttcgcaaatctgcactcgaagaactggcgaagaccttcgacccc
aaagccgacggcgagccaactcaccccgtctggaagcgctaccgggccattgccggaaac
acccctgcgagtcgcgagttgttcgccctgatcgttaagcacgcggactggctgcaccga
ctcggcaccgcggaaaccggtcccgaatcggccgaacaacaataccgcgaagcaatggtt
caaatgggccggcatttcctgggcaacatgcgcgtgtttttcgagatcccagtgtggccg
tgtgattacggccaagaaaccgcgtatttgatgctcctcggcagttaccccggcaccgaa
aaggcgcggtccaaatgcgtaggcgatgaggctgaactgttcttgcacggcgaggggcgc
atccatttcgcacgcggattggaactcgggcttcagggtaagacgctcgaacagagcccc
aagtttcgccccgatacagttgatgcagtgccgggaacgaatcgcgtttttggaaaattg
ctcgcgtcgtggctcacccaccggaccgaaccggccgtcatctactgcgctctcgaactg
gccgtgaaatggcgcaccgcagacgtgttgcctgcggcacgaaccatcgcggccgacaag
gagcgcggaccggatgcccggtgcgccgccctgcacgccgttgcccagttcggtaccatc
gcagacctaccgctattcgccccgctctacgacgacccaacgggtctcgtcgttccccct
ccgccgtcgatcggactcggcccgcgctcgcgccgcatgcaggttcgcgaccacgccgtc
ggtctcgcgctcctgctgtgcgaccgagacccgttcgagttcgggttcccctacgcgcag
aaccgtttcgcccgcgagaacggtcgcccggtcgtcgcggtctacgttggagagccgttc
ggcttccccaatgaggaagcacggaccgcggctcacaccaaagcccgtgcgttcctcgac
aagcaaaaagacgcaccgaagccggacccggcccacatgaagctcatcgaacggctcggc
agcgaggatttcgccgagcgcgaggccgcacacaagcaactgaaagaactcggctcgaaa
gcccgagctgccctcgaagcggggatcaaatccgggaacgcggagatcgtgaagcgatgc
cgtgagttgctcgaccaactggcccgtgccgagttcgacgcgacgcactggccgcggttc
gcaaaagtgatcggtgacgacaagccgagtcgtgcccttttcgagcgcatccggagtctg
ccgcgcaacgtcgaactactcgacgcggtcgcagcgaacccgaacgcagccggcaagcac
taccacgatcgctgggccgaactgaacaagaccgcgcgcgtcccgatcggggtcggctcg
ttccagctcgtagccgcgccgctcgcggacgtggtggggtggatgtatttgggcacattc
cccggcgccgaaggagcgttcaacacctcacacagcatcgattttcttcccggtgggaag
cactcaaacgacgcaattgcggccgcactcaaggacaaaacggtcgcgcccgcagttcgt
caactcgtcggtaagtggaccgcggcgcgggtcgattacactgggcgcgcgtatggcttt
caactcgcgctcgatttcggcatcgaagaggtgctctcggccgctcgcgaaaccgttcgc
gcgaaagtcaaagacgacccgtaccccggaaacacggcgcagaacatccggctcgcaatc
ctcgttgttggcaagctcggctcgaaggacgatctcccgctattggaagtgcactcagca
aacgatacccagtgcggcgtcttccttcacgatccgccagagaaaccgggcgaaccggtc
tttcgcatctaccggctagcaattgagggccaagacaccacgatccaggtgcgcgacgtg
tccaccgcgatgcgattacacctgctcggccagaacccggacgacttcggtttctactgg
cgctggccccacggctcggatgcagggaagcgcatggaacccgacaaccgattcagcccg
tactcaatcgggttcctgcgaaagaccgaccgtaccgcagcgcacaagaaagctcaggag
tggttcgacaaacagaagaaatga
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