Christiangramia flava: GRFL_1807
Help
Entry
GRFL_1807 CDS
T04640
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gfl
Christiangramia flava
Pathway
gfl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GRFL_1807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gfl03400
]
GRFL_1807
Enzymes [BR:
gfl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GRFL_1807
DNA repair and recombination proteins [BR:
gfl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GRFL_1807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
APU68531
UniProt:
A0A1L7I4L1
LinkDB
All DBs
Position
2048752..2049660
Genome browser
AA seq
302 aa
AA seq
DB search
MDQERKFGKRNVKLSNLEKVFFPEAGLTKGDLLDYYEKISEVILPYLKDRPLTMIRFPNG
INDKQFYQKDTPDYFPDWIPTKTIKKKEGGETHYVICNDLATLMYLTNQACITPHIWLSR
KDQADLPDRLIFDLDPSEDDFQKLKLAARKIRKYLKQEFELKSFIMTTGSRGFHISIPIK
RQYDFDEVRSFAQAASKELEAEFPEMFTTASRKAKRDGKIYLDVARNGFGQTAVTPYSVR
PIEGAPVATPLDWDELSKKDLSAQRYTIKNIFRRLGSKDDPWKNMDAEVQDLSAAIKKLQ
KD
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atggatcaagaacggaaattcggaaaacgaaatgtaaaattgagtaacctggaaaaggtt
tttttcccggaagcaggtttgaccaaaggcgatctgctggattattatgagaaaatttcc
gaagtcatcctgccctacctgaaagaccggccgcttaccatgattcggtttcccaatggc
atcaatgacaagcagttttatcaaaaggatacgcctgattattttcctgattggatccct
accaaaactatcaaaaaaaaggagggaggggaaactcattatgttatctgtaatgatcta
gccaccctcatgtatctcacaaaccaggcctgcattaccccgcatatctggcttagccga
aaagaccaggcagatcttccagacaggctcatttttgacctcgatccttcagaagacgat
tttcagaaattgaaattggctgcgcgaaaaatcaggaaatatctgaagcaggaattcgaa
ctgaagagttttatcatgaccacgggaagtcgcgggtttcatattagtattcccatcaaa
cgccagtatgattttgatgaggtacgcagtttcgcccaggcagcttccaaagaactggaa
gcggaattccctgaaatgttcactactgcttcccgaaaagcaaaacgggatggaaaaatc
tatctcgacgtggctcggaacggttttgggcaaactgcggtcactccttattccgtcagg
ccgatcgagggagcacctgtcgcgacgcctttagactgggacgaactttccaaaaaagat
ctttccgcgcagcgttataccataaaaaatatcttccgaagactgggaagtaaagatgat
ccctggaaaaatatggatgctgaagttcaggatctttccgcagcgatcaaaaaactgcaa
aaagattag
DBGET
integrated database retrieval system
