Christiangramia flava: GRFL_2087
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Entry
GRFL_2087 CDS
T04640
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gfl
Christiangramia flava
Pathway
gfl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GRFL_2087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gfl03400
]
GRFL_2087
Enzymes [BR:
gfl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GRFL_2087
DNA repair and recombination proteins [BR:
gfl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GRFL_2087
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
APU68811
UniProt:
A0A1L7I5D3
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Position
2337542..2339956
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AA seq
804 aa
AA seq
DB search
MSLEEYQKKRNFSKTPEPKAEVDASNKGRFVVQRHEATRLHYDLRLEIDGVLKSWAVPKG
PSMSHRDKRLAVETEDHPVKYLHFEGNIPKGNYGAGDMWIWDEGLFYSGTKDSDLSNAYK
NGDLKLVFNGKKLKGEFALVRTNRKETQNHWLLIKKKDDFSTDLNYDAEDYFSGKAKPET
RSTLKLRDPVQPMLATPAKEIFNDPGWIYELKWDGYRLITHVSDGQVYIHSRNGISYNSK
FPNLVQDLEQIPQDVVLDGEVVVLDEEGKPLFQELQNYSSKTKGALRYYVFDMLFLNGHS
MLDLPLTQRKSLIPEVLEDTQLAIYCDHIESLGTAFYNKAIEAGLEGVIAKKADSLYDPG
RRSENWLKIKAVESLEAVICGYTDSKATPFGSLILGVFENDELRYIGNCGTGFSVSQQQE
ILNKLEPFQQETSPFSRKIKLKGRKPNWTAPEVICEVNFSEWTRDEHLRHPVFKAIREDK
LPAEITIPKQQQAENIQNKETTSDNTLEIDGRKLKLTNLDKVYWPDSGLRKYDLIDYYLQ
VADYILPYLKDRPENMHRHPNGIGRPGFYQKDNEGLLEDWVETTRIHSKSAARDIEYLLC
QDEATLLYMANLGCIEINPWNSTIHNLDRPDYAVIDLDPSDKNTLEEVIEVAQVAREILE
NIEVPAYCKTSGSSGLHIYLPLGGNYSYDEARDFTKLVCYYIQEQTKKLTSMERVIKNRK
GKIYLDYLQNRRGQTLASAYCVRPKKSAPVSAPLEWKEVKKGLKIQDFNLKNMPERLQQK
GDLFSPVLSEGLNMEKAIEALEGL
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgtctctcgaggaataccaaaaaaagcggaatttttctaaaactcctgaaccaaaagcg
gaggtcgacgcttcgaacaaaggtcggttcgtggtgcagcgccatgaggcaacacgtttg
cattacgatttacggctggaaattgatggcgtcctcaaaagctgggccgttcctaaaggg
ccttccatgagccatcgcgataagcgcctggcggtggaaaccgaggaccatcctgtaaaa
tacctgcattttgaagggaatattccgaagggaaattacggcgctggcgatatgtggatc
tgggatgagggacttttttattcgggcacaaaggattcggatctttccaatgcttataaa
aatggcgatttaaaactggtctttaatggtaaaaagctgaaaggtgaatttgcacttgtg
agaaccaacaggaaagaaacgcagaatcactggttacttatcaagaaaaaagatgatttt
tcaaccgatcttaattatgatgcggaagattacttttctggaaaagcaaaacctgaaacc
cgatctaccttaaaactccgtgacccggtacagcccatgctggctactccggctaaagaa
atttttaacgatccgggctggatttacgaattaaaatgggatggttaccgattgatcacg
catgttagcgacggccaggtctatattcattcccgaaacggtatatcgtacaattccaaa
ttcccgaacctggtccaggacctggaacagatcccgcaggatgtggtcctggatggggaa
gtcgtggtgctggatgaagaaggaaaaccgctgtttcaggagcttcagaattattcctca
aaaaccaaaggagcgcttcgatattatgtttttgatatgctgtttctgaacgggcacagc
atgctggatctcccgctcactcagcgaaaatcactaattccggaagttttggaagatacg
caactggccatctattgtgatcacattgagtccctggggactgcattttacaataaagcg
atcgaagccggactggaaggtgtaattgccaaaaaagccgattctttgtatgatcctggc
agaaggtctgaaaactggttgaagatcaaagctgttgagagcctggaagcggtgatctgc
gggtatactgattcgaaagctaccccgtttggatccctgatattaggtgtttttgaaaat
gacgaactgcgttatatcgggaactgcggaacgggtttttcggtttcacaacaacaggaa
atcctgaataaactggagccctttcagcaggaaacgagtccgttttcccggaagatcaag
ctaaaaggtcgcaagccgaactggacagcgccggaagtgatctgcgaggtgaatttttca
gaatggaccagggatgagcatctaagacatccggtttttaaagcgatcagggaagataag
ctgccagcggaaataaccattccgaagcaacaacaggctgaaaatatccaaaataaagaa
accacttctgataataccctggaaattgacggcaggaaactgaagctgaccaacctggac
aaagtgtactggcccgattcgggtttgcggaagtatgacctgatcgattactatttgcag
gtggctgattatattttgccttacctcaaggatcgtcctgaaaatatgcatcgtcatccc
aacggaattggcaggccaggattttaccagaaagacaatgagggtttgctggaagactgg
gtggaaactaccagaatccattcaaaatcggctgcaagggatatagaatatttgctgtgt
caggatgaggccaccctgttatatatggccaatcttggatgcattgagatcaatccgtgg
aattcaacgattcacaatctggatcgtccagattatgcggtaattgatctggatccttct
gataaaaatactttggaagaggtgattgaagtggcccaggtggcacgtgaaattctcgaa
aatatcgaggttccggcttactgcaaaacttccggttccagcggactccatatttacctg
cctctggggggcaattattcttacgatgaagcgagggattttacaaaactggtttgttat
tatattcaggagcaaaccaaaaagcttaccagtatggagcgggtgatcaaaaaccgcaaa
ggaaagatctatctggattatcttcagaacaggcgggggcaaacgctcgcttcggcttac
tgcgtgcgtcctaaaaaatcagctccggtttcagctcccctggagtggaaagaagttaaa
aaaggtttgaaaattcaggatttcaacctgaaaaatatgccggagcggcttcagcaaaag
ggagaccttttcagcccggtactttccgaaggattaaacatggaaaaggccatagaggca
ctggaaggcctataa
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