KEGG   Gramella flava: GRFL_2087Help
Entry
GRFL_2087         CDS       T04640                                 

Definition
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
gfl  Gramella flava
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:gfl00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    GRFL_2087
Enzymes [BR:gfl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GRFL_2087
DNA repair and recombination proteins [BR:gfl03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     GRFL_2087
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
2337542..2339956
Genome map
AA seq 804 aa AA seqDB search
MSLEEYQKKRNFSKTPEPKAEVDASNKGRFVVQRHEATRLHYDLRLEIDGVLKSWAVPKG
PSMSHRDKRLAVETEDHPVKYLHFEGNIPKGNYGAGDMWIWDEGLFYSGTKDSDLSNAYK
NGDLKLVFNGKKLKGEFALVRTNRKETQNHWLLIKKKDDFSTDLNYDAEDYFSGKAKPET
RSTLKLRDPVQPMLATPAKEIFNDPGWIYELKWDGYRLITHVSDGQVYIHSRNGISYNSK
FPNLVQDLEQIPQDVVLDGEVVVLDEEGKPLFQELQNYSSKTKGALRYYVFDMLFLNGHS
MLDLPLTQRKSLIPEVLEDTQLAIYCDHIESLGTAFYNKAIEAGLEGVIAKKADSLYDPG
RRSENWLKIKAVESLEAVICGYTDSKATPFGSLILGVFENDELRYIGNCGTGFSVSQQQE
ILNKLEPFQQETSPFSRKIKLKGRKPNWTAPEVICEVNFSEWTRDEHLRHPVFKAIREDK
LPAEITIPKQQQAENIQNKETTSDNTLEIDGRKLKLTNLDKVYWPDSGLRKYDLIDYYLQ
VADYILPYLKDRPENMHRHPNGIGRPGFYQKDNEGLLEDWVETTRIHSKSAARDIEYLLC
QDEATLLYMANLGCIEINPWNSTIHNLDRPDYAVIDLDPSDKNTLEEVIEVAQVAREILE
NIEVPAYCKTSGSSGLHIYLPLGGNYSYDEARDFTKLVCYYIQEQTKKLTSMERVIKNRK
GKIYLDYLQNRRGQTLASAYCVRPKKSAPVSAPLEWKEVKKGLKIQDFNLKNMPERLQQK
GDLFSPVLSEGLNMEKAIEALEGL
NT seq 2415 nt NT seq  +upstreamnt  +downstreamnt
atgtctctcgaggaataccaaaaaaagcggaatttttctaaaactcctgaaccaaaagcg
gaggtcgacgcttcgaacaaaggtcggttcgtggtgcagcgccatgaggcaacacgtttg
cattacgatttacggctggaaattgatggcgtcctcaaaagctgggccgttcctaaaggg
ccttccatgagccatcgcgataagcgcctggcggtggaaaccgaggaccatcctgtaaaa
tacctgcattttgaagggaatattccgaagggaaattacggcgctggcgatatgtggatc
tgggatgagggacttttttattcgggcacaaaggattcggatctttccaatgcttataaa
aatggcgatttaaaactggtctttaatggtaaaaagctgaaaggtgaatttgcacttgtg
agaaccaacaggaaagaaacgcagaatcactggttacttatcaagaaaaaagatgatttt
tcaaccgatcttaattatgatgcggaagattacttttctggaaaagcaaaacctgaaacc
cgatctaccttaaaactccgtgacccggtacagcccatgctggctactccggctaaagaa
atttttaacgatccgggctggatttacgaattaaaatgggatggttaccgattgatcacg
catgttagcgacggccaggtctatattcattcccgaaacggtatatcgtacaattccaaa
ttcccgaacctggtccaggacctggaacagatcccgcaggatgtggtcctggatggggaa
gtcgtggtgctggatgaagaaggaaaaccgctgtttcaggagcttcagaattattcctca
aaaaccaaaggagcgcttcgatattatgtttttgatatgctgtttctgaacgggcacagc
atgctggatctcccgctcactcagcgaaaatcactaattccggaagttttggaagatacg
caactggccatctattgtgatcacattgagtccctggggactgcattttacaataaagcg
atcgaagccggactggaaggtgtaattgccaaaaaagccgattctttgtatgatcctggc
agaaggtctgaaaactggttgaagatcaaagctgttgagagcctggaagcggtgatctgc
gggtatactgattcgaaagctaccccgtttggatccctgatattaggtgtttttgaaaat
gacgaactgcgttatatcgggaactgcggaacgggtttttcggtttcacaacaacaggaa
atcctgaataaactggagccctttcagcaggaaacgagtccgttttcccggaagatcaag
ctaaaaggtcgcaagccgaactggacagcgccggaagtgatctgcgaggtgaatttttca
gaatggaccagggatgagcatctaagacatccggtttttaaagcgatcagggaagataag
ctgccagcggaaataaccattccgaagcaacaacaggctgaaaatatccaaaataaagaa
accacttctgataataccctggaaattgacggcaggaaactgaagctgaccaacctggac
aaagtgtactggcccgattcgggtttgcggaagtatgacctgatcgattactatttgcag
gtggctgattatattttgccttacctcaaggatcgtcctgaaaatatgcatcgtcatccc
aacggaattggcaggccaggattttaccagaaagacaatgagggtttgctggaagactgg
gtggaaactaccagaatccattcaaaatcggctgcaagggatatagaatatttgctgtgt
caggatgaggccaccctgttatatatggccaatcttggatgcattgagatcaatccgtgg
aattcaacgattcacaatctggatcgtccagattatgcggtaattgatctggatccttct
gataaaaatactttggaagaggtgattgaagtggcccaggtggcacgtgaaattctcgaa
aatatcgaggttccggcttactgcaaaacttccggttccagcggactccatatttacctg
cctctggggggcaattattcttacgatgaagcgagggattttacaaaactggtttgttat
tatattcaggagcaaaccaaaaagcttaccagtatggagcgggtgatcaaaaaccgcaaa
ggaaagatctatctggattatcttcagaacaggcgggggcaaacgctcgcttcggcttac
tgcgtgcgtcctaaaaaatcagctccggtttcagctcccctggagtggaaagaagttaaa
aaaggtttgaaaattcaggatttcaacctgaaaaatatgccggagcggcttcagcaaaag
ggagaccttttcagcccggtactttccgaaggattaaacatggaaaaggccatagaggca
ctggaaggcctataa

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