Geospiza fortis (medium ground-finch): 102031525 Help Entry 102031525         CDS       T03755                                  Symbol COL6A1 Name (RefSeq) collagen type VI alpha 1 chain   KO K06238   collagen type VI alpha Organism gfr  Geospiza fortis (medium ground-finch) Pathway gfr04510   Focal adhesion gfr04512   ECM-receptor interaction gfr04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:gfr00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     102031525 (COL6A1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     102031525 (COL6A1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     102031525 (COL6A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:gfr04147]     102031525 (COL6A1)    00536 Glycosaminoglycan binding proteins [BR:gfr00536]     102031525 (COL6A1) Exosome [BR:gfr04147]  Exosomal proteins   Exosomal proteins of other body fluids (saliva and urine)    102031525 (COL6A1) Glycosaminoglycan binding proteins [BR:gfr00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    102031525 (COL6A1)  Hyaluronan   Extracellular matrix or blood plasma proteins    102031525 (COL6A1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  VWA Collagen VWA_2 VWA_3 DUF1194 vWA-TerF-like DUF5507 Motif Other DBs NCBI-GeneID:  102031525 NCBI-ProteinID:  XP_005430687 UniProt:  A0A6I9HTK5 LinkDB All DBs Position Un AA seq 1020 aa AA seqDB search MRLRDFLLTLLLPAGLLWGGSCAQRPEIISQVSSTEDCPVDLFFVLDTSESVALRVKPFG DLVTQVKDFTNRFIDKLTQRYYRCDRNLVWNAGALHYSDEVVLIKSLTPMPSGQSELKNR VSSVNYIGKGTYTDCAIKRGIEELLIGGSHHKENKYLIVVTDGHPLEGYKEPCGGLDDAA NEAKLLGIKVFSVAISPNHLDQRLNIIATDHAYRRNFTATSLKPTRELDVAXCFLVLQKL NTEQSCCSFECQPPRGPPGPPGDPGHEGERGKPGLPGQKGEAGDPGRPGDMGPVGYQGMK GDKGSRGEKGSRGAKGAKGEKGRRGIDGIDGKKGEAGYPGLPGCKGSPGFDGPQGPPGPK GDPGAFGPKGAKGEPGNDGKPGRQGIPGNPGEKGAPGNRGEPGPAGETGDEGALGEDGPP GERGSNGERGAPGSPGDRGPRGQPGEPGPPGDQGREGPLGPPGDQGEPGPSGPKGYRGDD GPPGSEGPKGLPGAPGLPGDPGLMGERGEDGPPGNGTIGFTGAPGQPGDRGNPGINGTKG YVGPKGDEGEAGDPGNDNLTPGPSGIKGAKGHRGREGPPGPPGPVGPPGPDECEILDIIM KMCSCCECTCGPVDLLFVLDSSESIGLQNFQIAKDFIIKVIDRLSKDERVKFEAGESRVG VVQYSHDNTQELVAMGDANIDNIGALKQAVKNLQWIAGGTYTGEALQFTKDNLLRRFTSD KRVAIVITDGRSDTLRDPTPLNSLCDVTPVVSLGIGDIFRNPPNPDHLNDIACLSRPTRP GLSIQRDNYAELLDDTFLQNITSYICQEKKCPDYTCPITFTGPADITLLVDSSTSVGSKN FETTKKFVKRLAGRFLEASKPTDDSVRISVVQYSGRNQQKVETQFQYNYTVIAKAIDNME FMNDATDVNSALQFITEMYRRSARTAAKKRVLVFSDGHSQGITARAIERAVQDAQKADIE IYVLAVGSQANEPNIRVLVTGKSADYDVVYGERHLFRVPDYTSLLRGVFYQTVSRKIAVD NT seq 3063 nt NT seq  +upstreamnt  +downstreamnt atgaggctgcgagactttctgctcactctgctgctcccggccggcctcctgtgggggggc tcatgtgctcagcgcccagaaatcatctcccaagtctccagcacagaagactgccctgtg gacctgttcttcgtcctggacacctcagagagtgttgccctgagggtgaagccctttggg gacctggttacccaagtgaaagatttcaccaaccggttcattgataaactcacccagagg tactaccgctgcgaccgcaacctggtgtggaacgcaggagcgctgcactacagcgacgag gtggtgctcatcaagagcctcacgccgatgcccagcgggcagagcgagctgaagaaccgc gtgtcgtctgtcaactacatcgggaagggcacctacaccgactgcgccatcaagcgcggc atcgaggagctgctcatcggtggttcccatcacaaggagaataaatacctgattgtggtg actgatggacatcccttggaaggttacaaggagccctgtggaggcctggatgatgctgcc aatgaagccaaactgctggggatcaaagttttctctgttgccatctcccccaaccacttg gaccagcggctgaacatcattgccacggaccacgcctaccgccgcaatttcactgccacc agcctgaagcccacccgggagctcgatgtggctnnttgctttcttgtcttgcagaaactt aacacggagcaatcgtgctgctccttcgagtgccagcctccccgagggccccctggacct cctggtgaccctggccatgagggagaacgaggcaagccaggtcttcccggccagaaagga gaggctggagacccaggcagaccaggagacatgggacctgttggctaccaaggaatgaag ggtgacaaaggaagccgaggagaaaagggctcaagaggagccaaaggagccaagggtgag aaaggcaggcgtggaatcgatggcattgatggcaagaagggtgaagcgggataccctgga ttacctggctgcaaaggctctcccggattcgacggacctcaaggcccgcctggaccaaag ggagatcctggtgcttttggacccaagggagcaaagggggagcctgggaatgatggaaag cctggccggcaggggattcctggcaaccctggagagaagggagcccctgggaaccgaggt gagcctggaccagctggagagactggtgacgagggtgctctaggtgaggatggtcctcct ggagagcggggcagcaatggggagagaggagccccaggctcgccgggtgaccgtgggccc agaggacagccgggagagccaggaccacctggtgaccaagggcgggaaggacccctcggt ccacctggcgaccagggtgagcctggaccttcaggacccaaaggctacaggggagatgat ggcccccccggcagtgagggtccaaagggattgcctggagcacctgggctgcctggggac cctgggctgatgggagaaaggggtgaggatggtcctcctgggaatggcacaattggattc acaggtgccccagggcagccaggagacagaggcaaccctggcattaacggaacaaaaggc tatgtcggacctaaaggtgatgagggggaagctggcgaccctggcaatgataacctgacc cctgggcccagtggcatcaaaggagcaaagggccacaggggacgtgaaggtcccccggga ccaccaggacctgtggggcctccaggacctgatgaatgtgaaatcttggacatcatcatg aagatgtgctcttgctgcgagtgcacctgtggtcccgtcgacctcctgtttgtgttggac agctcagagagcattggcctgcagaacttccagattgccaaggactttatcatcaaagtc atcgaccgcctgagcaaggacgagcgggtcaagtttgaagctggggagtcccgtgtgggt gttgtgcagtacagccatgacaacacacaggagctggtggccatgggggatgccaacatc gacaacatcggagcgctcaagcaggcagtcaagaacctgcagtggattgctgggggcacc tacactggggaggccctgcagttcaccaaggacaacctgctgcggaggttcacatccgac aagcgcgtggccatcgtcatcacggacgggcgctccgacaccctgcgggaccccaccccg ctcaactccctgtgcgatgtcaccccggttgtttcccttgggattggtgacattttccgg aaccctccaaatccagatcacctgaatgacattgcttgtttaagcagaccaaccaggcca ggactgtccattcaaagggacaactatgctgagctcctggatgacaccttcttgcagaac atcacctcatacatctgccaagagaaaaaatgtcctgactacacctgcccaatcaccttc accgggccagccgacatcacgctgctggtggacagctccaccagcgtggggagcaagaac tttgagaccaccaagaagttcgtgaagcggctggcagggcgctttctggaggccagcaag cccactgacgactccgtgcgcatctcggtggtgcagtacagcggccggaaccagcagaaa gtggaaactcagttccagtacaactacacggtcattgccaaggccattgacaacatggag ttcatgaatgacgccacggacgtgaactctgctctgcagttcatcacagagatgtaccgg cgctcggcccgcactgcggccaagaagagggtgctggtgttttctgacggacactcccaa gggatcaccgccagggccattgagagggctgtgcaggacgcacagaaggctgacattgag atctatgtgctggcagtgggaagccaagccaatgagcccaacattcgtgtcctggtcaca gggaagagcgcagattacgatgtggtttacggggagcggcaccttttccgtgtgcctgac tacacctctctgctgcgtggtgtcttctaccaaactgtgtccaggaagatagctgttgac tga

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