Geospiza fortis (medium ground-finch): 102032717
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Entry
102032717 CDS
T03755
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
102032717 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gfr03400
]
102032717 (LIG4)
Enzymes [BR:
gfr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102032717 (LIG4)
DNA repair and recombination proteins [BR:
gfr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
102032717 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Tox-REase-9
Motif
Other DBs
NCBI-GeneID:
102032717
NCBI-ProteinID:
XP_005422734
UniProt:
A0A6I9HKG1
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All DBs
Position
Un
AA seq
912 aa
AA seq
DB search
MASAPVSQPPPKKTVASHVPFADLCSTLERIQKSKTRPEKTKYFKDFLDSWRKFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLGLPKDGKDAAKLLNYRTP
TGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKGQLKKSLLHLI
TQSTALEQKWLIRMIVKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPTVSL
SDVSIMLFSAFKPMLAAIADVPQIEKQMSNQTFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFIHNVFKSNIQNCILDGEMMAYNPEAQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMVNDEKLGHEVLRKRYEILSTVFTPVKGRIQVVHKRSARTRKEVV
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAVAETPPPNEKPTIFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKDPP
GNILCGAEKPEMYIEPCNSVIVQIKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLEDLRSKAQGKLASKHLHIDEYDEPHEKKRKTVSKVRKVIGIAEQFKAPDLSSVSKV
SNVFEDVEFCVMTGMGKYSKSDLESRIAQCGGSVVQNPGPETYCVIVGAENVRVKNIIAS
NKYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTANTDVAQLK
EVFSRMKDNKAMPLDLIAELEERYWCSSCQLGIFRGSTMYVDCYAVVNEPQSKIPGTTLS
TRALELRFYGAKVVSHLEEGVSHVVVGDDCSRVEEMKALRRTFGKKFKIVSELWVTHSVE
EGVAKNENQYLV
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcacctgtttcacagcctcctcctaaaaaaacggtggcctctcacgtgcca
tttgcagatctctgttctactctggagcgaatacagaagtccaaaactcgtccagagaaa
accaagtatttcaaggattttctggattcctggaggaaattccatgatgcactccatcaa
aaagagaaagatgtcacagattccttttacccagctatgcggcttattctcccacagttg
gaaagagaaaggatggcatatggaattaaagaaactatgcttgcaaagctctatattgaa
ctgcttggtttaccaaaagatggaaaagatgctgcaaagcttttaaattacagaacgcct
acgggctcacgtggagatgctggggattttgcaatgatcgcctactttgtgctaaaacct
aggagcccaaaacaaggcagactgacaatagaacaagtcaatgaacatttagatgcaatt
gctaacaataatgctgctaaaaacaagggtcagttaaagaaaagtcttcttcatttaatt
acccagagcacagcactggaacaaaaatggcttatccgaatgattgtaaaggatctaaag
cttggtgttagtcaacaaactatattttcaatttttcatcctgatgctgctgaattgcac
aatgttactaccgatttggaaaaagtttgcagacaactgcatgatcccactgtctcactt
agtgatgtttctatcatgttgttttctgcctttaaaccaatgcttgctgctattgcagat
gtcccgcaaattgagaaacaaatgagtaaccagacattctacatagaaaccaagctggat
ggtgaacgtatgcagatgcacaaagatggggatgtgtacaagtatttttcccgcaatggg
tttgactatacgcagcagtttggtgcttcacctcttgaaggttccttaacgccatttatt
cataatgtatttaagagcaatatacaaaattgcattcttgatggtgaaatgatggcttac
aatcctgaggcacaaacttttatgcaaaaaggaaacaaatttgacataaaaagaatggtg
gaggactctgatctgcagacctgcttctgtgtatttgatgtattgatggttaatgatgag
aagttggggcatgaagtactaaggaaacgatatgaaatcttaagtactgtatttacccca
gtaaagggcaggatacaggttgtccataagagaagtgccagaacaagaaaagaagtagtt
gatgctttaaatgaagccatagataacagagaggaaggaattatggtgaaagatcccatg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatatgtc
aatggactgatggatgagctggaccttttaattgttggtggttactgggggaaggggtct
cgtggtggaatgatgtctcattttctatgtgctgttgcagagacgccccctccgaatgaa
aagccgaccattttccactccatttgtcgtgttggctccggctatactatgaaagagttg
tatgatctgggcttgaaactggctaaacactggaagccctaccataggaaggaccctcct
ggtaacattttgtgtggcgctgaaaaacctgaaatgtacattgaaccttgcaactctgtc
atagttcagatcaaggcagctgagattgttgacagtgatatgtataaaactgactgtact
ttgagattccctcgaattgagaagataagggaagacaaagaatggtatgagtgcatgact
tcagacatgctagaagacctcagaagcaaagcacaaggaaagctggcatctaagcacctt
catatagatgagtacgatgagccacatgagaaaaaaaggaaaactgtttcaaaggtgagg
aaggtaattggaatagctgagcaatttaaagctcctgatctttctagtgtaagcaaggtt
tcaaatgtatttgaagatgttgagttttgtgttatgacaggaatgggaaaatactcaaag
tctgacctggaaagcagaatagcccagtgtggtggcagtgtggtacagaaccctgggcca
gagacatactgtgtcattgtaggagctgagaatgtcagagtgaaaaacatcattgcttcc
aacaaatacgatgtggtgagggcagaatggctccttcagtgttttcaaaccaaaatgctg
gtgccttggcaaccagcctttatgattcacatgtctcctgacacaaaagagcattttgct
cgtgagtatgattgttatggagacagctacacagcaaacacagatgttgcgcagctcaag
gaagtgttctcaagaatgaaagacaataaggcaatgcctctggacttgattgcagagcta
gaagaacgttattggtgtagcagttgtcaacttggtatattcagaggaagcactatgtat
gtggactgttatgctgttgttaatgagccccaaagcaaaatccctggaactacactttca
actagagctttggagctccgtttttatggtgcaaaagtagtttctcaccttgaagagggt
gtctcccatgttgttgtgggagatgattgttcacgggtagaagagatgaaagcactcagg
agaacatttgggaagaaatttaaaattgtatccgagctgtgggtaacacactcagtggag
gaaggagtcgcaaaaaatgaaaatcagtacttagtttaa
DBGET
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