Geospiza fortis (medium ground-finch): 102033049
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Entry
102033049 CDS
T03755
Symbol
CCDC88A
Name
(RefSeq) coiled-coil domain containing 88A
KO
K25392
girdin
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
gfr03037
]
102033049 (CCDC88A)
Cilium and associated proteins [BR:
gfr03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
102033049 (CCDC88A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HOOK_N
APG6_N
HOOK
GAS
Motif
Other DBs
NCBI-GeneID:
102033049
NCBI-ProteinID:
XP_005422654
UniProt:
A0A8N5ENF4
LinkDB
All DBs
Position
Un
AA seq
1879 aa
AA seq
DB search
MENEIFTPLLEQFMSSPLVTWVKTFGPLAGGNGTNLEEYVALVDGVYLNEVMLQINPKSA
NQRINKKVNNDASLRIQNLSILVKQIKTYYQESLQQLIMMSLPNVLIIGKNPFSEPGTEE
VKKLLLLLLGCAVQCQKKEEFIERIQSLDFDTRAAVAAHIQEVTHNQENVFDLQWMDVIV
LTQEYVEPLLKNMALHLKRLIDERDEHSETIIELSEERDCLRFLPHASAAQSPCGSPGMK
RTESRQHLSVELADAKAKIRRLRQELEEKTEQLLDCKQELEQMEAELKRLQQENMNLLSD
ARSARVYRDELDALREKAIRVDKLESEVSRYKERLHDIEFYKARVEELKEDNQVLLETKT
MLEDQLEGTRARSDKLHELEKENLQLKAKLHDMEMERDMDRKKIEELMEENMTLEMAQKQ
SMDESLHLGWELEQINRTTELSEVPQKSLGHEVNELTSSRLLKLEMENQSLLKTVEELQS
AVGSVEGSSSRILKMEKENQRLSKKLEELENEISQEKQSLQNSQNQSKDLLKEKAQLEKT
LEALRENSERQIKLLEQENEHLNQTVASLRQRSQISAEARMKEIEKENKILHESIKETSS
KLNKIEFEKKQVRKELEHYKEKGERAEELENELHRLEKENELLQKKITNLKITCEKIEAL
EQENSDLETENRKLKKTLDSLKNLTFQLESLEKENSQLDEENLELRRTIESLKCTSIKVA
QLQLENKELESEKEQLKKSLELMKASFKKTERLEVSYQGLDTENQRLQKALENSNKKIQQ
LESELQDLETENQTLQKNLEELKISSKRLEQLEKENKLLEQETSQLEKDKKQLEKENKRL
RQQAEIKDSTLEENNVKISNLERENKSLFKEIVVYKESCLRLKELEKENKELVKRATIDK
KTLVTLREDLVNEKLKTQQMNNDLEKLAHELEKIGLNKERLLHDEQSSDDRYKLLESKLE
STLKKSLEIKEEKIAALEARLEESTNLNQQLRQELKTVKKNYEALKQRQEEERMVQNSPP
RSGEGNPSVNKWEKENQETTRELLKVKDRLIEVERNNATLQAEKQALKTQLKQLETQNNN
LQAQILALQRQTVSLQEQNTTLQTQNAKLQVENSTLNSQSTSLMNQNAQLLIQQSALENE
NEAVLKEREDLKGLYEALLKDHERLEQLHERQAAEYESLIAKHGSLKAAHKNLEVEHKDL
EDRYNQLLKQKVQLEELEKVLKTEQDKMLQQSEKHETVAAEYKKLRDENERLTHTYTQLL
RENEVLQTDHKNLKTLLNNSKLEQTRLEAEFSKLKEQYQQLDITSTKLNNQCELLSQLKG
NLEEENRHLLDQIQTLMLQNRTLLEQNMESKDLFHVEQRQYIDKLNELRRQKEKLEEKIM
DQYKFYEPSPPRRRGNWITLKMRKLIKSKKDGNRERLKSVTLTPTRSESSEGFLQLPHQD
SQDSSSVGSNSLEDGQTLGTKKSSMGALKRLPFLRNRPKEKDKMKAFYRRSMSMNDLVQS
MVLAGGQWTGSSEHLEGPDDISTGKRRKELGAMAFSTTAINFATVNSSTGFRSKQLLNNK
DTTSFEDVSPQGISDDSSTGSRVHASRPASLDSGRTSTSNSNNNASLHEVKAGAVTSQSR
PQSHSSGEFSLLQEHEAWSSSSSSPIQYLKGHTRSSPVLQHRTPESHSKPPKTGSPGSEV
VTLQQFLEESNKRNSSEMKYASEENLLDEVMRSLSESAELAGREKLRKQPAAGCGIVRSL
SVRNTGDFSDGRSLKPEQPVRPSLRKAEDLYFSSSPIKFTPGAQGKPRSVKEKIQATVTQ
RQSRDCNPYATLPRASSVISTAEGSTRRTSIHDFLSKDSRPPVPVDAAPADRSAPPSSNV
EAIPESRNSKSRSREQQSS
NT seq
5640 nt
NT seq
+upstream
nt +downstream
nt
atggagaacgagatcttcacaccccttctggagcagttcatgtcgagccctcttgtcacc
tgggtgaagacgttcggaccgctggctggaggaaatgggaccaacctggaggaatatgtg
gcgctggtggatggagtgtatctgaacgaagtcatgctgcaaatcaatccaaagtctgct
aatcagaggataaacaaaaaagtaaacaatgatgcatcattaaggattcaaaatttgtct
attttggtgaaacaaatcaaaacttactatcaggagagtttgcagcagttgatcatgatg
tctttgccaaatgtgctaataattggcaaaaatcctttttctgagccaggtactgaagaa
gtaaaaaagctcctcctgcttttgcttggttgtgcagttcagtgtcagaaaaaagaagaa
tttattgaaagaatccaaagtctggattttgataccagagcagctgttgcagcccatatt
caggaggtaactcataatcaggaaaatgtgtttgacctgcagtggatggatgtcattgtg
ctgacacaagagtatgttgagcctctcctgaagaatatggcattgcatttaaaaaggctt
atagatgaaagagatgagcactcagagaccatcattgagctgtcggaggagcgggactgc
ctgcgcttcctgccgcacgcctcggccgcgcagtcgccgtgcggctcccccggcatgaag
cgcaccgagagccggcagcacctgagcgtggagctcgccgacgccaaggccaagatcagg
aggctcaggcaggagcttgaggaaaagactgagcagctgcttgactgtaaacaagagctg
gaacagatggaagctgaactgaagagacttcagcaagagaacatgaacctgctgtcggac
gcgcgctctgcccgggtgtaccgggacgagctggacgcgctgcgggagaaggcgatccgc
gtggacaagctggagagcgaagtcagccgctacaaagagaggctccatgacattgagttc
tacaaagccagggtggaggagttaaaggaagacaatcaagtgttgctagaaaccaagacc
atgttggaagatcagttagaggggacccgagctcgttcagataaactgcacgagttagaa
aaggagaatttacagctgaaagctaaattgcatgacatggagatggagcgtgatatggac
agaaagaagattgaggagctcatggaggaaaacatgaccctagaaatggctcagaaacaa
agtatggatgagtctttgcatcttggctgggagctggagcagataaacaggactactgaa
ctttctgaagtgccacagaaatcactgggccatgaggtgaatgagctgacatccagcagg
ttactgaagctggaaatggaaaaccaaagtttgctgaagactgtggaagagctgcaaagt
gcagtgggctctgtggaaggcagcagttcaaggattctgaaaatggaaaaagaaaaccaa
agacttagcaagaagcttgaagagctggagaatgaaattagccaagagaaacaaagtctt
cagaacagtcaaaatcagagtaaagatttgctgaaagaaaaagcccagcttgaaaagaca
cttgaagcacttcgagagaactccgagcgacaaattaaactcttagaacaagaaaacgaa
cacttgaatcaaaccgtggcttctctaaggcagcgctcacaaatcagtgctgaggcaaga
atgaaagaaattgagaaggaaaataaaatcctccatgagtctatcaaagaaaccagcagt
aagttaaataaaatagaatttgaaaaaaagcaggtcaggaaagaactggaacactacaaa
gagaaaggggagagggcagaagaattagagaacgagctgcatcgtctggagaaggaaaat
gagttattacagaagaaaatcaccaacctaaaaatcacttgtgagaagattgaggcctta
gaacaagagaactctgacctggagacagagaacagaaagctgaaaaaaaccttggatagc
ctgaaaaacctcacttttcaattggaatccttagaaaaggagaattcccaactggacgaa
gaaaatttagagttacggaggacaatcgaatccttgaagtgtacaagcattaaagtggca
cagttacagttagaaaataaggaactggagagtgaaaaggagcagctcaaaaaaagcctt
gaactgatgaaagcctcttttaaaaagactgaacgcttggaagtcagttaccaaggcctg
gacacagaaaaccaaaggctacagaaagccctggaaaacagcaataagaaaattcagcaa
ttagagagcgaattacaagatttagagactgaaaatcaaaccctgcaaaagaacttggaa
gagttaaaaatctccagtaagcgcctggagcagttggaaaaggagaataagttgttagaa
caggagacttctcaactggaaaaggataagaagcagctggaaaaggagaataaaaggctt
cgacagcaagcagaaattaaagatagtaccttagaagaaaataatgtcaaaatcagtaat
ctggaaagggaaaataaatctctgtttaaagaaatagttgtgtataaagagtcttgtctg
cgcctgaaagagctggaaaaggaaaataaagaactggtgaaaagagctaccattgataag
aaaaccctggtcactttgagagaggacttggtgaatgagaaattgaagactcaacagatg
aacaatgatctggaaaaactggcccacgagcttgagaaaattggcttgaacaaggagcgt
ctcctgcacgatgagcagagcagtgatgacaggtacaagcttttggagtccaaattagaa
tcaacgctcaagaagtctctggaaataaaagaagaaaaaattgctgctttggaggctcgt
ttggaggaatcaacaaatctaaaccagcagctgcgtcaggagctgaaaacagtgaagaag
aactatgaagctctcaagcagagacaagaagaggaaaggatggttcagaattctcctcca
agaagtggagaaggaaatccgtctgtcaataagtgggagaaagaaaatcaagagactact
agagaattactgaaagttaaagatagattaatcgaggtggagaggaataacgcgacgctg
caggcggagaagcaggcgctgaaaacgcagctcaagcagctcgagacgcagaacaacaac
ctgcaggcccagatcctggccctgcagagacagaccgtgtccctgcaggagcaaaacaca
actctgcaaactcagaacgccaagctgcaggttgagaattccacgctgaactcgcagagc
acgtccctgatgaaccagaacgcgcagctgctgatccagcagtcggccctggagaacgag
aacgaggcggtgctgaaggagcgcgaggacctgaaggggctctacgaggccctgctcaag
gaccacgagcgcctggagcagctgcacgagcgccaggccgccgagtacgagtccctgatc
gccaagcacggcagcctcaaggctgcccacaagaacctggaggtggagcacaaggacttg
gaggataggtacaatcagttgctgaaacagaaagtgcagctggaagagctggagaaggtt
ctcaagacagagcaggacaaaatgctgcagcaaagtgagaaacatgaaactgtggcagca
gaatataaaaagcttcgggatgaaaatgaaaggctcactcacacgtacactcagctcttg
agggagaatgaagtgctccagactgaccacaagaatctgaaaacattattgaacaattcc
aaactggagcaaacacgattggaagctgagttttccaaactcaaagaacagtaccagcaa
ctggatattacatcaacaaagctgaataaccagtgtgagctgctcagccaactgaaagga
aacctggaggaggaaaacagacacctgctggatcaaatccagaccttaatgctgcagaac
agaacattactggagcagaacatggaaagcaaggatctcttccatgtggagcaaaggcag
tacattgacaaactaaacgaattgaggcggcagaaggagaagctggaggagaagataatg
gatcagtataaattttatgagccatctccaccaagaagaaggggcaactggatcacgctg
aagatgaggaagctgatcaagtccaagaaggacgggaaccgcgagcgcctcaagtcggtg
acgctgacccccacgcgctccgagtccagcgagggattcctgcagctgccccaccaggac
agccaggacagctcctccgtgggctccaactccctggaggatgggcagaccctgggcacc
aaaaagagtagcatgggtgcactgaaaagactgccctttttgaggaacagaccgaaggaa
aaagacaaaatgaaggccttctaccgtcgctccatgtccatgaatgacctggtgcagtcc
atggtcctggcaggaggacaatggacaggtagttctgagcatctggagggtcctgatgat
atatccacgggtaaaaggaggaaggaattgggagctatggccttctctactacagcaatc
aactttgccactgtcaactcctccacaggcttcagatccaagcagttgctaaataataaa
gatactacatcctttgaagatgtaagtccacaaggtattagtgatgattctagtacagga
tcaagagttcatgcttccagaccagccagccttgatagtggcaggacatccactagcaat
agcaataacaatgcttcactccatgaagtcaaagcaggtgcagtgaccagccagagcagg
ccccagagccacagcagtggggagttcagcctgctccaggagcacgaggcctggtccagc
agcagcagcagccccatccagtacctgaagggccacaccaggtccagccccgtgctccag
cacaggacacctgagagtcacagcaaaccccccaaaacgggctcccctggcagtgaagtg
gtcaccctgcagcagttcctggaggaaagcaacaagaggaactccagtgagatgaagtat
gcaagtgaagagaaccttttagatgaagtgatgaggagcttgtctgagtccgcggagctg
gcggggagggagaagctgcgaaagcagccggcagctggctgtgggattgtgagatccctg
agtgtcagaaacacaggggatttctcagatggacgatccctcaaaccagagcagccggtg
aggcccagcctcaggaaggctgaggatctctacttcagtagctctcccatcaaattcacc
cccggcgctcaggggaagccccgctccgtgaaggaaaagatccaagcgacggtgacccag
cgacaatccagggactgcaacccctacgccaccttacctcgtgccagcagcgtgatttcc
acggcagaaggcagcacccgaaggacaagcatccatgattttttgtctaaggacagtagg
cctcccgtgcccgtggatgcagccccggctgacaggagtgctccgcccagctccaatgtg
gaagctatcccagaaagcagaaattcaaaaagcaggtctagggagcaacaaagctcctaa
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integrated database retrieval system
