Geospiza fortis (medium ground-finch): 102035479
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Entry
102035479 CDS
T03755
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102035479 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gfr03041
]
102035479 (PRPF40A)
Spliceosome [BR:
gfr03041
]
Complex A
U1 snRNP components
U1 related factors
102035479 (PRPF40A)
Complex B
102035479 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
Motif
Other DBs
NCBI-GeneID:
102035479
NCBI-ProteinID:
XP_014166260
UniProt:
A0A6I9ZDP7
LinkDB
All DBs
Position
Un
AA seq
811 aa
AA seq
DB search
MMGHPGMPHYPPMGMHPMGQRPPNMPPVPHGMMPQMMPPMGGPPMGQMPGMMQSVMPGMM
MSHMSQAAMQPTVPPGVNSMDAQVGVTPPGTQTTHPVVSTVQQSSTTTSSASEEHSKQKS
TWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQT
KESRWAKPKELEDLEAMIKAEENRKKPEDAAAAASAAKQEASGDAAAKKEDEDAQPVKKT
YTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQ
TEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEI
YEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYCTTWSEAQQYLMDNPTFAEDE
ELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQLFLDELHEHGQL
HSMSSWMELYPAISSDIRFTSMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKG
FVVEVNTSFEDFVTVISSTKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKE
SAFKSMLKQATPPIELDAVWEDIRDRFVKEPAFEDITLESERKRIFKDFLHVLEHECQHH
HSKTKKHSKKSKKHHRKRSRSRSGSESEDDDSHSKKKRQRSESRSVSERSSSAESERSYK
KSKKHKKKSKKRRHKSDSPESDVEREKDKKDRERDSEKERARQRSESKHKSPTKKRPGKD
SGNWDTSGSELSEGELEKQRRTLLEQLDEDQ
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgatgggccacccgggcatgccccactaccccccgatggggatgcaccccatgggccag
agaccccccaacatgcccccggttccccacgggatgatgcctcagatgatgccccccatg
ggaggacccccgatggggcagatgcctggaatgatgcagtcagtgatgcctggaatgatg
atgtcccacatgtcccaggctgccatgcagcccacggttcctccaggagtgaacagcatg
gatgcacaagtaggtgtgacccctcctgggactcagacaacgcatcccgtggtgtccaca
gtccagcagagctccaccaccaccagctctgccagcgaggagcactccaagcagaaatcc
acgtggacagagcacaagtccccggatggaagaacttattactacaacactgagaccaag
cagtccacgtgggagaagccagatgacctcaaaacccctgctgagcaattgctgtccaag
tgtccctggaaggagtataaatcagattctgggaagccttattattacaattcccaaaca
aaggaatcccgctgggcaaaacccaaagagctggaggatcttgaagcaatgattaaagct
gaagaaaacaggaaaaagccagaggatgcggctgccgccgcctcggcggccaagcaggag
gcctcgggagatgctgctgcaaagaaggaggatgaggatgcccaaccagttaaaaaaacc
tacacgtggaacacaaaggaagaggccaaacaagcatttaaagaactgttaaaagaaaag
cgggttccatccaatgcttcttgggagcaggccatgaaaatgatcattaatgaccccaga
tacagtgctttagcaaaactgagtgaaaagaagcaggcctttaatgcctacaaagttcag
acagagaaggaggagaaggaagaagccagatccaagtacaaggaagccaaggaatccttc
cagcgtttcctggaaaaccatgagaagatgacatccaccaccagatacaaaaaagctgaa
cagatgtttggggagatggaagtgtggaatgccatatccgagcgggaccggctggagatt
tatgaggatgttctgttcttcctgtccaagaaggagaaggaacaagccaagcagctgcgc
aagaggaactgggaagctctgaagaacattctggataacatggccaatgtcacctactgc
accacctggtcagaggcccagcagtacctcatggacaaccccacctttgctgaggatgag
gagctccagaacatggataaggaggatgccctgatctgttttgaggaacatatcagggcc
ttggagaaagaggaggaggaagagaagcagaaaagtttgctgagggaaaggaggaggcag
cgtaaaaacagggaatctttccagctgtttctggatgagctgcacgagcacgggcagtta
cactccatgtcctcctggatggaattgtacccagccatcagctctgacatcagattcacc
agcatgctcggccagcctggatcaacagcacttgacctgttcaagttttatgtggaggat
ttaaaagctcgttaccacgatgagaagaagataattaaagacatcttaaaggataaagga
tttgtggtggaggtgaacacttcctttgaggattttgtcactgtcatcagctccactaaa
agagccaccacgttggatgcagggaatatcaagctggctttcaacagtctgctggagaag
gcggaagcgcgggaacgggagcgggagaaggaggaggcccggaagatgaagaggaaggaa
tcagccttcaagagcatgctgaaacaagccaccccccccatcgagctggatgctgtctgg
gaggatatcagagacagatttgtgaaggaaccagcatttgaagacatcaccctggaatct
gaaaggaaaaggatatttaaggatttccttcatgtacttgagcacgagtgtcagcaccac
cactccaagaccaagaaacattcgaagaaatccaaaaaacaccaccggaagcgctcgcgt
tcccgctccggctcagagtctgaggatgacgacagccactccaagaagaagcggcagcgc
tcggaatcgcggtcggtgtcggagcgttcttccagcgccgagtccgagaggagttacaag
aagtccaaaaaacacaagaagaagagcaagaagaggaggcacaagtctgattcaccagaa
tctgatgtggaacgagagaaggacaagaaagatagagagagggacagtgagaaggaaaga
gccagacagagatccgagtccaagcataaatctcccactaaaaaacgccctggaaaagat
tccggaaactgggatacctctggcagcgagctcagcgagggggagctggaaaaacagagg
aggactcttttggaacagctggatgaagatcaatga
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