Geospiza fortis (medium ground-finch): 102037839
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Entry
102037839 CDS
T03755
Name
(RefSeq) chromosome unknown open reading frame, human C5orf42
KO
K22859
protein JBTS17
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
gfr03037
]
102037839
Cilium and associated proteins [BR:
gfr03037
]
Primary cilia and associated proteins
Ciliogenesis and planar polarity effectors (CPLANE) complex
102037839
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Joubert
DUF6380
Motif
Other DBs
NCBI-GeneID:
102037839
NCBI-ProteinID:
XP_014164562
LinkDB
All DBs
Position
Un
AA seq
3064 aa
AA seq
DB search
MEIKLDVLVSTCIKQRKPWPRISWVGQEKEAVFLLDGKHINEINLSSGKTKKKIPSLQSL
LKNVVVLATSGNAAWLAGILTTGELFLWNKDKDCLKIVPAIEESKKVVAGAQECLMRLYL
YVSGDGRKVLLTTPTACTFLWESIEHENTAFGKNSPGRWTQVLTDESVILPSTEEKEIGV
DAAFIQNEVLGDCCLCSFVFYSGECLVLTFLILRWHENTFKNVSSLPYQIQWVQQTCSLV
NLVPQCVSVKSRGALLCAFARDGLLLAVAVNQTDPKATQVLFLNTLNFVTVLGSLKGCSS
KSSVTPSRFIRSYWVGDMSWTPDSLFLACMLKRGCLVLLTCMGELLTLIASGCSVEFGPA
QFIPFHPLITYRQHHSCCQDSSQSLGSSDSERDILRQRFSVASHPRLPYLIVSDGYMITL
LRFPNNFTPSGFMRSLLLDSTQQLENIRQNLLNFRCKRRSRYLRSLLSLKASLLNQVQNQ
SSIFSTIPRFLEKDTTEMNEKTMDLLDLEEELDNEKQFYSTASSFYNQRIYSSVGKADEG
CLEFASMFDTIHAEDYIEEKDKSSLELYSIQKNLLGAWQIGISKNMEEKDALLNYTVNCI
IHFFSIVQFVKCTLLNQDASLYKSVKNTQWMHFVLKYFQQCLTVLYWHSRASVIGHVAKL
TLETLKLMFVQQQDQLFSKNLLACFCLLKMVSHILSRVCVLQFENFFASPDSNTLVELDS
LTVPVFLVLDDNTTQQFSSLESLLRECPQVSHDAKTEKRLTVLWRLLYKKVIWYQVQLKR
KVSKNAEEVSVVSLLLSHIQATIQSSGVTLEQHLKINSVSGEEQFLLGSYRESLDIWKRS
LCELKTNGGKRACFLQRRYYLAILFCHLYQYNLCEAQGLCDHLVREILRRSQLSTSQMEE
FSGMFTLPKSHELWMVTSIHTDTAMAVIRSMARFMAAYFTKQLLYIFPPHNVDILHPLHI
KQDLPPRVIPLQHSLVTRAVRDQKLSSVWTAEYALDLFFIGGLVPEAVWLAQTLGDWKLS
VSVGLAYQLYCQNSEELSRMKKPECHLPLSLLPMQTFQEKLKSLLGQPVTSETSGHIKYK
KFTDPIEEEDADVLYSSIQELLKAAVMADVDILSETFQLLMDSVKDLCRKFNGLVPAGLC
LPAPPLYCPQPASLSEEDSDDILLKTEKEVRQKVSGVLQRIILLFRAAHCSCSAAQWYIT
QLKWARKVMQKIRMKGSLPTLSPFPETLLCYCNFRTALYGSTSSEAHQFDDITCKILGWF
REFCALCWMFHVREKLSDNCRRYQTARENINNIKDPSKNGYDAYTVEHCLNAVEWACRML
PFCRFMNVEELVQDVILSLLGELPPVKKVAEIFVKAFPNPEDVRVPLRDKYNGLQQRLRH
STVKDPVSEEMMSVIQAAEEVRKKALRRVVKNIGPIEVNIWEPVEEAASNDEEHCYDRFS
LGTSLSTSTLTDVGNPQVYNADTADILSDALENELQQQREVGNKNTARKIKAPNCKTKHK
DKMCRRDRLNQHNLPVVGAWEFERDDDEYVRFLELFLSYVLERDLIKYSNLGIPFLTSFS
GLLREQELNSLFFDVHTTLKRRQNKTRSQSVFRAGSCYTVTLASCDPGEVSAYNENKNIL
EKPTIVQTVGQTREPSVCNLKKGLKEGLFGLKYELIYRAQTDNQGVSVAQASQTFRNHTS
STLQTQAIPKYVYKTLDVVGIVPAEELPIDLMGKLSNISKLLEWMIRWSDRRLLHGSNKQ
DSLEETLPMIHLKTSSVAVLTSFWLLEQLYGDRSQTRNIKCKHPEDQYLKEIASLSEAQS
RTEEESSMDEGSSTVANSPLDVQIVQIYDNLCESDLRARGTADEREEKRRRRFRRDDFID
AKRLFSTRSTKFFEEPYETSKSSNISGKIRPVEHQREQGAIPWDSTKQIPEEDEVCSPEV
KVAISAVDSAQEDPNVEETKEEKAKQNISADTVSDFQPSETAVSTVSSLASHTSVFAKKQ
EVKEEVPREEKASTSETVRQMLQDEMFKLVQLQQINFMSLMQLVQSSFTNVPNVQQVLQQ
HRLVQLAGSQPAHTAESNASLKTQVPTQEGKGKTGQESSVFQPRKSAEDESNNSQIKNYL
DKSASLTLFESNSKETGLMSPSHDLHSSVPTKPLHLLAPSSGIQKKVKLIPVEKNISYSN
GFPLLKLESSCHIKPAFLHPTEMSSAFSRPPSVPRVAWSSSDSLWDHQSSYAPRKSKAEE
DFHQSRYNPEISRQKHEEKERWADTVREGPPKYLNSDQYEGQQEDSPQPQFPENVNMFKA
PSTQNLAAIPLLHLQLDPVPRVPPAVRQPITTTLIPVKTAAKDADSRETQWDAGMSLLQI
NLPQKKKAPNLIPLRDLIAFEQRHKHHSVPSSSFGQDETKPIQLLRTDVEPFELRDVQNK
RKSKKRRSKKQLKEKEEKKKPSVSFRPDDSIINISDTAVPSESETGAHQPKLTSYVQDGF
LMSMDAMNKATITSADLHYLASVGKKTAETQDASTNTNPENELVISSEILLPDMYLNLSF
PTEVNEKPLPSLLSDAPDLHKREYISVIDIEDSDILSNLPIKPEPAEEIAAEQQNEKLEI
PSTAKLHHTAASVTNAVPPAALQKQDDQQENVSNKLQKEDKSDSATDIVTSNTAHEDGGT
LPSSGLPLKLIETEYFSTKQKEMDMQLRVLENIVENMEQDFRNSKMLVKLIEDFEMAADS
DLGAHPAVSEAAGVIGAASEDHLMGMIFEDVIDDQKGSLNLKYPMPSSTAVDAHSSASSA
LASKFPSGLKSPSVAIVCNLQDVLDYFLFTSALRVLDSGSGHSQRTEKERKEIQTWMKRK
QKERMKEYLKKLDEQRQKEHHPFNLRKNHHNPTSKDIRIFQKKKEEKDKALLSEHHRIRV
SEALSLMNEMLSETVASPASNHRTLSSTRSAQAYRRRKMASSTGGHLNSPVLVERSRAAA
KPGFGQNVQRFTPALGLTQSRAAECRVSRSSTQKPPRVATAVQTESVDPDADRDVVSPWT
VPEDIQRILQDTPDSMFQASAVHSMSFSPLGSISTDSASESTGSILSKLDWNAVEAMIAD
VEDK
NT seq
9195 nt
NT seq
+upstream
nt +downstream
nt
atggagattaagctagatgtgctcgtctctacgtgtatcaagcaaagaaaaccatggccc
cgaatatcatgggttggacaggaaaaagaggctgtttttcttctagacggtaaacatata
aatgaaattaacttgtcgtcagggaagacaaagaagaaaatcccttcgctgcagtcattg
ttgaaaaatgtggttgtcttagcaacatcaggaaatgctgcttggttggcaggaatactt
acaacaggagagctctttctttggaataaagataaagactgcttgaaaattgtaccagca
atcgaagagtccaaaaaagtagtagcaggagcacaagagtgtttaatgagattgtacttg
tatgtatctggagatggcagaaaggtactgttaactactcctacagcatgtacctttttg
tgggagagtatagaacatgaaaatacagcctttggtaaaaactctcctgggcgttggaca
caagttttaactgatgaatcagtcatattgccttctactgaagaaaaagaaattggagtg
gatgctgcgttcatacaaaatgaggtactaggtgattgctgtttgtgttcttttgtattt
tactctggtgagtgtttggtgctcacatttttgattcttcgatggcacgaaaataccttt
aaaaatgttagttctttgccataccagatccagtgggtacaacagacttgttctcttgtt
aatttggttcctcagtgtgtgtctgtaaagtcaagaggagctctgctatgtgcatttgca
agagatgggcttctgcttgcagtagctgtaaatcaaactgatccaaaggcaactcaggtt
ttgtttctgaacaccttgaattttgtaactgttttgggtagcctgaagggttgtagtagc
aagagtagcgtgaccccgtccaggttcatcagatcttactgggttggcgatatgagttgg
actcctgatagcctttttttggcttgcatgttaaaacgtggatgtttggttttattgaca
tgtatgggggaattgctgaccttaattgcttctggatgctctgtggaatttggaccagca
cagtttattccgtttcatccactaataacatacagacagcaccactcttgttgtcaagat
tctagccagtctcttggttcttcagattctgaacgtgacatcctgagacagagattctct
gttgcttcacacccaagactaccctacctcattgtctctgatggatacatgataacactg
ctaagatttcctaacaactttacaccatcaggatttatgagatcccttttgcttgattcg
acccaacagcttgaaaacatccgtcagaatttgctgaacttcaggtgtaaaaggagatct
cggtacttacgatcactgttgtctttaaaagccagtcttttaaatcaagttcaaaatcaa
agttctatcttttccaccattccaagatttctggagaaggacacaacagaaatgaatgag
aaaaccatggatttactggaccttgaagaagaattagacaatgaaaagcagttttacagt
accgcttccagcttctataaccaaagaatctattcatctgttggtaaagctgatgaaggc
tgcttagaatttgcatcaatgtttgataccatccatgcagaagattatattgaagagaaa
gataaatcatcattggaactatattccattcagaaaaacctccttggtgcatggcagata
gggatttcaaaaaatatggaagagaaggatgcattactgaattatacagtgaactgcatt
atccattttttcagcattgttcagtttgtgaaatgtactttgctaaaccaggatgcatct
ttatacaagtctgtgaagaatactcaatggatgcattttgtcctgaaatattttcagcag
tgtttgactgtcttgtactggcattcaagagccagtgtgattgggcatgtggcaaagctg
acattagaaactttaaaactgatgtttgtacagcaacaagatcagttgttctcaaaaaac
cttctggcatgcttctgtcttttgaaaatggtttctcacatcctaagcagagtatgtgta
ctgcagtttgagaatttttttgcctctcctgacagtaatactcttgtggaacttgactct
ctcacagtgcctgttttcttagttcttgatgacaatactactcagcagtttagctcactg
gaatctctgcttagggaatgtcctcaagtaagccatgatgcaaaaacagaaaaaaggttg
actgtactatggcgattattgtataagaaagtgatttggtatcaggtgcagctaaaaaga
aaagtgagcaagaatgcagaagaggtttctgttgtctcattgcttttaagtcatatacaa
gcaaccatccagtcttcaggagtgacattagaacaacatctgaagattaattctgtatct
ggtgaggagcagttccttttaggatcatacagagaatctctggacatttggaaaagatct
ctttgtgaactcaagacaaatggaggaaaaagggcatgttttcttcagcgtagatactat
cttgcaatattgttttgtcacctgtatcaatataacttgtgtgaagctcagggactctgc
gatcatctggtaagagagattctaaggcgatcacaactctccacaagtcagatggaagaa
ttttccggtatgtttacattgcctaaaagtcatgaactgtggatggtaaccagcattcat
actgacactgccatggctgtgattcggtccatggcacgattcatggctgcttatttcaca
aagcagctgctctatatctttcctccccacaatgttgacatccttcatccacttcacatc
aaacaagacttacctcctcgtgtcattccactgcaacactctttggtgaccagagccgtc
agggaccagaagctttcatctgtgtggacagctgaatatgctcttgatttgttctttatt
ggtggacttgttccagaggctgtgtggttagcacagacacttggggactggaagctgtct
gtgtcagttggtctggcctaccagctgtattgtcagaactccgaggagctctcaagaatg
aaaaaaccagagtgtcacctgccattgagcttattaccaatgcagacttttcaggaaaag
ttaaagtctttgttaggacagccagtaacttctgaaacatcaggacatattaaatacaag
aagttcacagatcctattgaagaggaagatgcagatgttctttacagttcaatacaggaa
ctactgaaagcagctgttatggcagatgttgatattctctcagagacatttcagcttttg
atggattctgtgaaggatctttgcagaaagtttaatggtttggttccagctgggctctgt
cttccagcaccaccattgtactgtcctcaaccagcttctctcagtgaagaagacagcgat
gacattcttttaaaaacagagaaagaagtccgtcagaaagtgtcaggagttcttcagcga
attatcttgctcttccgggctgctcattgttcttgctctgcagcacagtggtatattaca
caactgaagtgggcaagaaaagttatgcagaaaattcgaatgaaaggttctcttcctacg
ctgagtccattcccagagactttgctttgttactgcaatttccgcactgctctctatggg
tctacatcttcggaagcccatcagtttgatgacattacctgtaaaattttaggttggttc
agagagttctgtgcattatgttggatgtttcatgttcgtgaaaaattatctgacaactgt
aggcggtaccaaactgcaagggaaaatattaacaatatcaaggatccgagtaagaacgga
tatgatgcctacacagttgagcattgtctgaatgcagtggagtgggcttgtcgaatgctt
cctttctgcagattcatgaatgttgaagaattagttcaggatgtaattttaagtctgctt
ggagaattgccaccagtaaaaaaggtggcagagatttttgtaaaagcatttcctaatcct
gaagatgtaagagttccactaagggataaatataatggacttcagcagcgactcagacac
agtactgttaaagatcctgtaagtgaagaaatgatgtctgttatacaagctgctgaagaa
gtgaggaagaaggccttgagacgtgtagtaaagaacataggccctatagaagttaatatt
tgggagccagtagaagaggcagcttcaaatgatgaggaacactgttatgacagattctca
ttaggcactagtctaagcacaagcacacttactgatgttgggaatcctcaggtatataat
gcagacacagcagacatactttctgatgctttggaaaatgaactccaacaacaaagggaa
gtaggtaacaaaaataccgcgcgcaagataaaagcccctaactgtaaaacaaaacataaa
gacaaaatgtgtaggagagacaggcttaatcaacataatttgcctgtagttggtgcttgg
gagtttgaacgtgatgatgatgagtatgttagatttttagaactctttttgagttatgtc
cttgagagagacctgataaagtacagcaaccttggaattccatttctcactagcttttct
gggctgcttcgggagcaagagttgaactctctctttttcgatgttcacacaacactaaaa
cgtcgacaaaacaaaactagaagtcaaagtgtgtttagagcagggtcttgctatactgtc
accctggcatcctgtgatcctggagaagtatctgcgtataatgaaaacaaaaatatattg
gaaaaaccaacaattgtacagactgttgggcagaccagagaaccttctgtgtgtaaccta
aaaaaaggacttaaagaaggcttatttggtttaaaatacgaattgatatacagagctcag
actgacaatcaaggagtcagtgttgcacaagcaagccagacctttcgtaaccatacttcc
tctaccctgcaaactcaggcaattcctaaatacgtttacaaaactcttgatgtagttggt
attgtaccagcagaagaactgcctatagatttgatgggcaaattgagcaatatttcaaaa
ttgctggagtggatgatcagatggtccgatagaagactgctccatggatccaataaacaa
gattccttagaagagactctcccaatgatacatctgaaaacatcatcagtagctgtcctt
acatctttttggttgttagaacagttatatggagacagatctcaaacaaggaacataaaa
tgtaagcatccagaggaccagtatctgaaagaaattgcatctctatcagaagcccagtct
agaacagaggaagaaagtagtatggatgaaggctcttccacagtggccaattctcctctt
gatgtccagattgtacaaatctatgataatctttgtgaaagtgatttgagggcgagaggc
acagcggacgagagagaggagaagaggcgacggagattccgccgggatgactttattgat
gcgaagagactgttcagtactcgttctacaaaattctttgaggagccatatgaaacttca
aagagctccaacatctctggcaagatcagacctgtagaacatcaaagagaacagggtgca
atcccatgggactctaccaagcagatccctgaagaagatgaagtctgttctcctgaagtg
aaggttgccatttcagctgtagatagtgctcaagaagatccaaatgtggaggaaacaaag
gaagaaaaggctaaacagaatattagtgcagacactgtaagtgattttcagccttctgag
actgctgtgtcgactgtgtcaagtcttgcctcccatacttctgtttttgcaaagaagcaa
gaagtcaaggaagaagtccctagagaagagaaagcaagcacatcagaaactgtcaggcag
atgctgcaagatgaaatgtttaaattagttcagctccagcagatcaacttcatgagttta
atgcaattagtgcagtcatcctttaccaatgtgccaaatgtgcaacaagtattacagcag
catcggttggttcagctggcagggagccagcctgcacacactgctgaaagcaatgcttct
ctgaaaacacaagtgcccactcaagaaggaaagggaaaaactggtcaagagagctctgtt
tttcagccaaggaagagtgcagaagatgaaagcaacaatagtcaaataaaaaattatctg
gataagagtgcctctttgacattatttgaaagcaacagcaaggaaacaggattaatgtca
ccatcccacgatttgcattcttcagtgcctactaaaccacttcatctcctagctccttcc
tcaggcatccaaaaaaaagtgaagcttatccctgttgaaaaaaatattagttactcaaat
ggatttcctttgcttaagctggaatcaagttgtcatatcaaaccagcatttttacatcca
acagaaatgtcatcagcattttccaggccaccctcagtacctcgagtagcttggagttca
tcagattccttatgggaccatcagtcatcatatgcaccaagaaagagtaaggcagaggaa
gatttccaccaaagtagatacaaccctgagatttcaagacaaaagcatgaggaaaaggag
agatgggcagacacagtgcgtgagggtcctcccaaatatctgaattcagatcagtatgaa
ggacagcaagaagattcacctcagccacagttccctgaaaatgtgaatatgttcaaagca
ccaagcactcagaacctggctgctattcccctgttgcacttgcaacttgacccagtacct
agagttccaccagctgtaaggcagccaatcactactactttaatacctgttaaaactgct
gcaaaggacgctgactccagagaaacacagtgggatgcaggaatgtccctacttcagatt
aatttacctcagaagaagaaggcaccaaatctcatcccacttcgagatctcattgcattt
gagcaacgccacaagcatcattctgtgcccagtagttcctttggacaagacgaaaccaaa
cctatccagctactaagaactgatgttgaaccatttgaacttagagatgtgcagaacaaa
agaaaaagtaaaaagaggcgtagtaagaagcaactgaaagagaaggaggaaaagaagaaa
ccaagcgtgtccttccgtccagatgactccatcatcaatattagtgacacagcagtgcct
tctgaatcagagactggggctcaccaaccaaaattgacatcttacgttcaagatggtttt
ctcatgtcaatggatgcaatgaataaagcaactattacttcagcagatctacactatttg
gcttctgtaggaaaaaaaacagcagaaactcaagatgcaagtacaaatactaacccagaa
aacgagctggtcatttcctctgaaatactactgccagacatgtatttaaacctgagtttc
cccactgaagtgaatgagaaacctttgccatcccttctgtcagatgcacctgatttgcat
aaacgggaatatatcagtgtgattgacattgaagacagtgacatccttagcaatttgccc
ataaaacctgagcctgcagaagagatagctgctgaacagcagaatgagaagcttgaaatt
ccatctactgcaaaacttcatcacacagcagcttctgttactaatgcagttccacctgca
gcacttcagaagcaagatgatcagcaggagaatgtgtcaaacaaattgcaaaaggaagat
aagtcagattctgctacagatattgtaacttcgaacacagcacatgaagatgggggaact
cttccttcttcagggcttccactcaaactaattgaaacagaatacttttccacaaagcag
aaggaaatggacatgcagttacgggtactagagaacatagtggaaaatatggagcaggat
ttcagaaatagcaaaatgttagtgaagctgatagaagattttgaaatggctgctgattca
gaccttggtgctcatcctgcagtctctgaagctgctggagtcattggtgctgcatcagaa
gatcacttgatgggcatgatttttgaagatgttatagatgatcaaaaggggagcttaaac
ttgaaatatcctatgcccagttctactgcagtggatgcacactcttctgcctcttcagcc
ttggcttctaagtttcccagtggcctgaagtcaccttctgttgccattgtttgcaattta
caggatgtgctagattattttctgtttacatctgccctcagggtccttgattctggttct
gggcattctcaaagaacagaaaaggaaaggaaagagatccaaacatggatgaaaagaaag
caaaaggaaagaatgaaagaatatttgaagaaactagatgaacaaagacagaaagaacat
catccattcaacctgagaaagaatcatcataatcctacttcaaaggatattagaatcttc
cagaaaaagaaagaagaaaaagacaaagccctgctgtctgagcatcacagaatcagagta
tcagaggcactttctctgatgaatgaaatgttatctgaaacagtggcatcaccagcaagc
aatcacaggaccttgtccagcacaagatcagctcaagcttacagaaggaggaagatggca
tctagtacaggagggcatctgaacagtcctgttctggtggaaaggagcagagctgctgcc
aaacctggctttggtcaaaatgttcaacgtttcaccccagctcttggtttaacacagtcc
agggctgctgagtgcagagtcagcagaagctcaacacaaaagcctcctcgagttgccact
gcagttcagacggagagtgttgatcctgacgctgatcgagacgtggtgagtccttggact
gtgcctgaggatatccaaagaatacttcaagatactcctgactccatgttccaggcctct
gcagtgcacagcatgagcttctctcctctgggcagcatcagcactgacagtgcttctgaa
agcacaggcagcatcctcagcaagctggactggaatgcagttgaggctatgatagcagat
gtggaagacaagtga
DBGET
integrated database retrieval system
