Geospiza fortis (medium ground-finch): 102041882
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Entry
102041882 CDS
T03755
Symbol
CHD1
Name
(RefSeq) chromodomain helicase DNA binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gfr03021
]
102041882 (CHD1)
03036 Chromosome and associated proteins [BR:
gfr03036
]
102041882 (CHD1)
Transcription machinery [BR:
gfr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
102041882 (CHD1)
Chromosome and associated proteins [BR:
gfr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
102041882 (CHD1)
SLIK complex
102041882 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
102041882
NCBI-ProteinID:
XP_014166824
LinkDB
All DBs
Position
Un
AA seq
1639 aa
AA seq
DB search
MSGSGSMSGTGSDSESEEDREKSSCEESESDYEPKNKVKSRKPPTRIKPKSGKKNAGPKK
RQLDSSEDDDEEEEDDDYDKRGSRRQATVNISYKEAEETKTDSDDLLEVCGEDVPQPEED
EFETIEKFMDSRVGRKGATGAATTIYAVEADGDPNAGFEKSKEPAEVQYLIKWKGWSHIH
NTWETEETLKQQNVKGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQ
IVERIIGIKMLIRILMHFAAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALIAKKFQAR
IDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHESLELRDYQLNGLNWLAHSW
CKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWAPQM
NAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKSFLGGLNWAFIGVDEA
HRLKNDDSLLYKTLIDFRSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEEFEEEHG
KGRECGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKA
LSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQHLIRSSGKLILLDKL
LIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSE
DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG
SVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPFNKEELSAILKFGAEEL
FKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFKVANFSNMDEDDIELEP
ERNSRNWEEIIPEVQRRRIEEEERQKELEEIYMLPRMRNCAKQISFNGSEGRRSRSRRYS
GSDSDSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAVARDAE
LVDKSETDLRRLGELVHNGCIKALKDSSSGQERAGTIFRGLGKVKGPTFRISGVQVNAKL
VISHEEELAPLHKSIPSDPEERKRYVIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSW
EMIKMDPDLSLTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLARKEAQRLAGAGNSKR
RKTRTKKNKVLKPAKLKEEIKSDSSPQPSEKSDEDDDENNKPDTVIKKEAEEKRETKEKE
NKRDLKREKKEKEDKKELKEKDIKEKRENKVNEIKSENKEKTKKIPLLDTPVHITASSEP
VPISEESEELDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHIT
ECLKEYTNPEQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQHNDQNISGHV
NTHVIRNPDVERLKENTNHDDSSRDSYSSDRHLSQYHDHHKDRHQGDAYKKNDSRKRPYS
AFSNGKDHRDWDQYKQDSRYYSDSKHRKLDDYRSRDHRSSLEGSLKDSRVHLDHRSHSDH
RIHSDHRSSSEYSHHKSPRDYRYHSDWQMDHRASGSGPRSPLDQRSPYGSRSPLGHRSPF
EHSSDHKSTPEYTWSSRKT
NT seq
4920 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggatcagggtcaatgtcgggaacaggttcagattctgaatcggaggaagacagg
gagaaaagcagctgtgaggagagtgaatctgactatgagccaaaaaacaaggtcaaaagc
cgtaaacctccaaccagaattaagcccaaaagtgggaaaaagaatgcaggaccaaaaaag
aggcaacttgattcttcagaggatgatgatgaggaggaggaggatgatgattatgataag
aggggatctcgtcgtcaggcgacagtcaacattagttacaaggaagctgaagaaaccaag
acagattctgatgatttgctagaagtttgtggagaagacgttccacaacctgaagaagat
gaatttgaaactatagagaaatttatggatagtcgagttggccgtaaaggagccacaggt
gctgcaaccacaatatatgcagttgaggccgacggtgacccaaatgctgggtttgaaaaa
tcaaaggagccggcagaagtacagtatcttattaaatggaaaggttggtcgcacatccac
aacacttgggaaactgaggaaacactgaagcaacaaaatgttaaaggaatgaagaaactg
gacaattacaagaaaaaggatcaggaaacaaaacgatggctgaaaaacgcttctccagaa
gatgtggaatattacaactgccagcaggagcttacagatgatctacataaacaataccag
atagtggaaagaataattggtattaaaatgctgatcagaattctgatgcattttgcagct
cattcaaatcagaaatcagctgctggttatccagactactattgtaagtggcagggtctg
ccttattctgaatgtagctgggaagatggagctctcattgccaaaaagtttcaggcacgc
attgatgaatacttcagcagaaatcaatccaagaccactccctttaaagattgcaaggtt
ctaaaacaaaggccacgatttgttgcactaaaaaaacaaccgtcttacattggaggacac
gaaagtttagagttaagagattatcagttaaatgggttgaattggcttgctcactcatgg
tgcaaagggaacagctgtattcttgcagatgaaatgggtctaggtaaaacaatacaaaca
atttcttttctgaactatctgtttcacgaacatcaattgtatgggcctttcttgttggtt
gtgccactttctaccttgacatcttggcaaagagagattcaaacctgggctcctcagatg
aatgctgtagtttacttaggagatataactagtagaaatatgataagaactcatgaatgg
atgcatccacagaccaaacgattgaaatttaacatactcttaacaacatatgaaattttg
ctaaaggataagtcattccttggtggtctgaattgggcattcataggagttgatgaagct
catcgtttaaaaaatgatgactctcttctgtacaaaactttaatagactttaggtctaac
catcgtcttcttattactggaacacctctgcaaaactctctcaaagagctttggtcttta
ctccacttcatcatgccagaaaagttttcttcatgggaagaatttgaagaggagcatggt
aaagggagagagtgtggttatgcaagtcttcacaaagaacttgaaccatttctgctgaga
agagttaaaaaagatgtagaaaagtccttacctgctaaagttgagcaaattctgaggatg
gaaatgagtgcattgcagaagcaatactacaagtggattttaaccaggaattataaagcc
cttagcaaaggatcaaaaggcagtacctcaggctttttgaacatcatgatggaactcaag
aagtgttgcaaccattgctacctcattaaaccgccagatgataatgaattctataataaa
caggaggccttacagcatttaatacgtagcagtgggaagctgatccttcttgacaagcta
ctgattcgtctgcgagaacgtggcaacagagtcctaattttctcacagatggtaaggatg
ctggacatccttgcagaatatctgaaatatcgtcaatttccatttcagagacttgatgga
tcaataaaaggggaattgaggaaacaagcactggatcattttaatgcagaaggatcagag
gacttctgctttttactgtctaccagagctggaggattaggtatcaacttggcatctgct
gatacggtggttatatttgattctgactggaatccacagaacgatctgcaagcacaggct
agagcacatagaattggacagaagaaacaggttaatatttatcgactagtcacaaaagga
tcggtagaagaagatattcttgaacgagccaagaaaaagatggttttagatcatttagta
attcagagaatggacactacagggaaaactgtgttacatacaggctctactccttcaagc
tcaacaccttttaacaaggaggagttgtcagcaattttaaagtttggtgctgaggaactt
tttaaagaacctgaaggggaagaacaggagcctcaagaaatggatatagatgaaatattg
aagagggctgaaactcgggaaaatgagccaggtccattaactgtaggagatgagttgctt
tcgcagttcaaggtggccaacttctccaatatggatgaagatgatattgagttggagcca
gaaagaaattcaagaaattgggaagaaatcattccagaggtccagaggcgaagaatagaa
gaggaggaaagacaaaaagaacttgaagaaatatacatgcttccaagaatgagaaactgt
gcaaaacagattagcttcaatggcagcgaagggagacgcagtaggagtagaagatactct
ggatctgatagtgactccatctcagaaagaaaaaggccaaaaaaacgtggaagaccacga
actattcctcgagaaaatattaaaggatttagtgatgcagagataaggcggtttatcaag
agttacaagaaatttggtggccctcttgagaggttagatgctgtagctagagatgctgag
cttgttgataaatcagagacagacctcagacgtttgggagagcttgtacataatggatgc
attaaagccttaaaggacagttcatctggacaagaaagagcaggtacaatattcagggga
cttgggaaggttaaaggcccaacattccgaatctcaggagtgcaagtaaatgcaaagtta
gtcatctctcatgaagaagagttggcaccattgcacaaatccattccttcagatccagaa
gaaagaaaaagatatgtcatcccatgccacactaaggctgctcattttgatatagactgg
ggtaaggaagatgactccaatttgttgataggcatctatgaatatggttatggcagctgg
gaaatgataaaaatggatcctgatctcagtttgacacagaagattttgcctgatgatcca
gataagaaaccccaggcaaagcagttacagacccgtgcggactacctcattaaattactg
aataaagaccttgcaaggaaggaagcacaaaggcttgctggagcaggcaattcaaagagg
cggaaaacaagaactaagaagaataaggtgttaaagcctgcaaaattaaaagaagaaata
aaaagtgattcttcaccacaaccctcagaaaaatctgatgaagacgatgatgagaataac
aagccagatactgttataaagaaggaagctgaagaaaaaagagagacaaaagaaaaggaa
aataagagggatttgaaaagggagaaaaaagaaaaagaggataagaaagaattaaaagaa
aaggatattaaagaaaagagagaaaacaaagtaaatgaaatcaaatccgaaaataaggaa
aaaactaaaaaaattccattgctggatactccagttcatattactgcatctagtgaacca
gttcctatatcagaagaatctgaagagctagatcagaaaacttttagtgtgtgcaaagaa
agaatgagacctgtcaaggcagcattgaaacagcttgatcgaccagagaagggcctttct
gaaagagaacagctggaacatactagacagtgtcttatcaaaattggggatcatattact
gagtgtctaaaggagtacacaaatcctgaacaaattaaacagtggagaaaaaatttgtgg
atttttgtctctaagtttacagaatttgatgccagaaagctgcacaaactgtataaacat
gcaatcaaaaaacgtcaagagtctcagcaacacaacgatcagaatattagcggtcatgtg
aatacacatgtaattagaaatccagatgtggaaagactgaaggagaatacaaaccatgat
gacagtagcagggacagctattcctctgatagacatctgtcacaataccacgatcatcat
aaggacaggcatcagggagatgcttacaagaaaaatgactccaggaaaaggccttattca
gccttcagcaatggaaaagatcacagagactgggatcagtacaaacaagacagcaggtac
tacagtgatagtaaacataggaagttagatgactacaggagcagagaccacaggtcaagc
ctggaagggagtctaaaagacagccgggttcatttggatcaccgttcccattcagaccac
aggatacattcagatcaccgttcctcttccgagtacagccatcataaatctcccagagat
tataggtaccactccgactggcaaatggaccacagagcttcaggtagtggcccaaggtca
cccctggatcagaggtctccttatggttcaagatctccccttggtcacagatctccattt
gaacattcatcagatcacaaaagtacacctgaatatacatggagtagccggaaaacataa
DBGET
integrated database retrieval system
