Geospiza fortis (medium ground-finch): 102042136
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Entry
102042136 CDS
T03755
Symbol
FUBP1
Name
(RefSeq) far upstream element binding protein 1
KO
K13210
far upstream element-binding protein
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfr03019
]
102042136 (FUBP1)
03041 Spliceosome [BR:
gfr03041
]
102042136 (FUBP1)
Messenger RNA biogenesis [BR:
gfr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
102042136 (FUBP1)
Spliceosome [BR:
gfr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
102042136 (FUBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KH_1
KH_2
DUF1897
KhpA-B_KH
Secretin_N
Motif
Other DBs
NCBI-GeneID:
102042136
NCBI-ProteinID:
XP_014163357
UniProt:
A0A6I9Z6F4
LinkDB
All DBs
Position
Un
AA seq
576 aa
AA seq
DB search
MNSNDYGYGGQKRPLEDGDQPDAKKVAPQNDSFGNQLPPMHQQQRSVMTEEYKVPDGMVG
FIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRP
TPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADK
PLRITGDPYKVQQAKEMVLELIRDQGGFREVPIPRFAVGIVIGRNGEMIKKIQNDAGVRI
QFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWN
MGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKMFTI
RGTPQQIDYARQLIEEKIGGPVNPLGPPVPHGPHGVVPGPHGPPGPPGPGAPMGPYNPAP
YNPGPPGPAPHGPPAPYAPQGWGNAYPHWQPPNPPDPGKPGTDPNSAAWAAYYAHYYQQQ
AQPPPAAPPGGPATTQTNGQGDQPNPAPAGQVDYTKAWEEYYKKMGQAVPAPAGAPPGGQ
PDYSAAWAEYYRQQAAYYAQTSPQGMPQHPPAPQGQ
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgaattcaaacgactacggttacggagggcagaaaagacctctcgaggatggagatcaa
ccagatgctaagaaagttgctccccagaatgactcttttggaaatcagctaccaccaatg
catcagcagcaaaggtctgtgatgacagaggagtacaaagttccagatgggatggttgga
ttcataattggcagaggtggagagcagatctcacgcatacagcaggagtctggctgtaaa
atacagattgcacctgatagtggaggcctgcctgaaagatcttgtatgctaactgggaca
ccagagtctgttcagtcagcaaaaagattgcttgatcagatagttgaaaagggaagacct
acacctggatttcatcatggtgatggacctggaaatgcagtccaagaaattatgattcca
gcaagtaaagcaggattagttattgggaaaggtggagagacaattaaacaattacaggag
cgggcaggtgtcaaaatggtcatgattcaagatggtccacagaacactggtgcagacaag
ccccttaggataactggagacccttataaagttcagcaagccaaggaaatggtgctggag
ttaattcgtgatcaaggtggctttagagaggttccaataccacgatttgctgtaggtatt
gtaattggaagaaatggagagatgattaagaagatccagaacgatgctggtgttaggatt
cagttcaagccagatgatggaacaactccagatagaatagcccagatcacagggcctcct
gacagatgtcagcatgctgcagaaattattacagatctccttcgcagtgttcaggctggt
aaccctggtggaccaggacctggtggtcgaggaaggggtagaggccaaggcaactggaac
atggggcctcctggtggattacaggagttcaatttcattgtccctactggcaaaactgga
ttaattattgggaaaggtggtgaaactattaaaagtataagccaacagtctggtgctaga
atagaacttcagagaaatcctccacctaatgcagatccaaacatgaagatgtttactatc
cgtggaacaccccagcaaatagattatgcacgacaacttatagaagaaaagattggaggt
ccagtgaatccattgggtccacctgttccccatggtccccatggtgttgttcctggcccg
catggacctcctgggccaccaggtcctggtgctcccatgggaccatataatccagctcct
tacaacccaggccctcctggtcctgcacctcatggtcctccagctccatatgctccacag
ggatggggaaatgcttatccacactggcagccaccaaacccaccagacccaggtaagcca
ggaacagatcccaattcagcagcgtgggcagcttattatgctcactattatcagcagcaa
gcacagccaccacctgcagcccctcctggtggaccagctacaacccaaaccaatggacaa
ggagatcagccaaatccagcaccagcagggcaggttgactataccaaggcctgggaggag
tactacaaaaaaatgggtcaagctgttcctgcccctgctggggctcctccgggcgggcag
ccagattacagtgcggcgtgggctgagtactacaggcagcaggcagcgtactacgctcag
acaagtccccagggaatgccacagcatcctccagcaccacagggccaataa
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