Geospiza fortis (medium ground-finch): 102042418
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Entry
102042418 CDS
T03755
Symbol
UPF2
Name
(RefSeq) UPF2 regulator of nonsense transcripts homolog (yeast)
KO
K14327
regulator of nonsense transcripts 2
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03013
Nucleocytoplasmic transport
gfr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102042418 (UPF2)
03015 mRNA surveillance pathway
102042418 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfr03019
]
102042418 (UPF2)
Messenger RNA biogenesis [BR:
gfr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102042418 (UPF2)
mRNA cycle factors
P-body specific factors
102042418 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
102042418
NCBI-ProteinID:
XP_005426336
UniProt:
A0A8N5HUV9
LinkDB
All DBs
Position
Un
AA seq
1271 aa
AA seq
DB search
MPAERKKPANMEEKESQLNNKEKEFSERRPVSTREKPKEDVKVGMKRETLKVPEDKKKKM
EEDKRKKEDKERKKKEEDKVKAEEEQKKKEEEEKKKLEEEEKKKQEEEEKKKQEEEAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQNAPESRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QAWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKTVAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQEKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKYSQNKDSSKDESRDSKDAKDNKEAAGNEDLELELENLDINDDALELDCGDEAE
DLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
RKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQINIE
TKNKTVRFIGELTKFKMFSKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYK
DLSKVTTEKVLRQMRKLPWQDAEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGV
NPDGSPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLDV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEEAVRQVQDLEREFLIKLGIVNDKDSKD
SITEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNEEEEGEEEEEENTDYLTD
SNKENETDEENTEVMIKGGGLKHVPCAEDEDFIQALDKMMLENLQQRSGESVKVHQLDVA
IPLHLKSQLKKGPPLGGGEGESESGDTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQ
QQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNA
DLIFKTGGRRR
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgcaaaaagccagcaaatatggaagaaaaagaatctcagttaaataat
aaagaaaaagaatttagtgaaaggcgaccagtgagcaccagggagaagcccaaagaagat
gtgaaggttggtatgaagagagagactttaaaggttcctgaagataaaaagaaaaaaatg
gaagaggataaaagaaagaaggaagacaaggagcggaagaaaaaggaagaggataaagta
aaggcagaagaggagcaaaagaagaaagaagaagaagaaaaaaagaaacttgaagaagag
gagaaaaagaaacaagaggaggaagaaaaaaagaaacaagaagaagaagctgctcaactg
aaggagaaggaggaagcacatcagctccatcaggaggcttgggagcgccatcaggcaaga
aaagagctccgcagcaagaaccagaacgcaccggagagtcgtccggaggaaaacttcttc
agcagactggactccagtctgaagaagaacacagcttttgttaagaagctaaaaaccatt
acagagcaacaaagggactccttgtcccatgactttaatagcctgaatttaagcaaatac
attgcagaagcagtagcttctattgtggaggccaaactgaaaatatcagacgtgaactgc
gctgtgcacttatgttccctctttcaccagcgatatgctgactttgctccttcgttactt
caggcttggaaaaaacattttgaggcaaggaaagaagagaagactcccaacattaccaag
ttaagaactgatttgcgtttcattgcagaattgacaatagttgggattttcactgacaag
gaaggtttgtctttaatctatgagcagcttaaaaatattattaacgctgatcgagaatcc
cacactcatgtttctgtggttatcagcttttgtcggcactgtggagatgacattgctggc
ttggtaccaaggaaggtaaaaactgttgcagagaagtttaacttgagctttcctcctagt
gagataattagcccagagaaacaacagcccttccagaatttgttgaaggaatactttaca
tctttgaccaaacacctgaaaagggaccacagggagctacaaaatattgaaagacaaaac
agacgcattctccactccaaaggagagctgagtgaagatcgacacaagcagtatgaggaa
tttgcaatgtcctatcagaagctgttggcaaattctcagtctctggctgatcttttggat
gagaacatgcctgacctcccccaggagaaaccaacacctgaggaacatggacctggtatt
gatattttcacaccaggaaagcctggagaatatgacctggaggggggtatctgggaagat
gaagatgctagaaacttctatgagaatctcattgacttgaaggcttttgtgccagcaata
ttgtttaaagataatgaaaaatattcccagaacaaggattccagcaaagatgaatcaaga
gattcaaaagatgccaaagataataaggaagcagctgggaatgaggatctggaattggag
ctggagaacctggatattaatgatgatgcactggagttggactgtggagatgaggcagaa
gatcttacaaagaagcttcttgatgagcaagaacaagaggatgaagaagccagtactgga
tctcatttaaaactcatagtagatgcttttcttcagcagcttccaaactgtgtcaacaga
gacctcatagacaaggcagcaatggatttttgcatgaatatgaatacaaaagccaacaga
agaaaactggtacgagcacttttcatagttcctagacaaagattggatttgctaccattt
tatgcaagactggttgccacgttgcatccctgtatgtctgatgtagcagaggatctctgt
tccatgctgaaaggggatttcaggttccatgtaagaaaaaaggaccagatcaacattgaa
acaaagaataaaactgtgagatttattggtgagctcaccaagtttaagatgttctccaaa
aacgatactctccactgtttaaagatgcttctgtcagacttctctcatcaccatattgaa
atggcatgtaccttgctggaaacctgtggaagattcctcttcagatcaccagaatctcac
ctaagaaccagtgttcttttggaacaaatgatgaggaaaaaacaagcaatgcatcttgat
gcacgctatgttacaatggtagaaaatgcctattactactgtaatccccctccagcagaa
aaaactgtgaagaaaaaacgtcctcctttgcaggaatatatccgtaagcttctttacaag
gatctctccaaggtcaccacagagaaggtcctgagacagatgcgcaagctgccttggcag
gatgcagaagttaaggactatgttatatgctgtatgatcaacatctggaatgtgaaatat
aatagtattcactgtgtagccaacctcttagcagggttggtcctataccaggaagatgtg
ggaattcatgttgtggatggagtgctagaggatattcgactaggaatggaggttaatcaa
ccaaagttcaaccaacggcggatcagcagtgccaagtttttgggggagctttacaattat
cgaatggtggagtcagctgtaatattcagaactctgtattcctttacctcttttggagtg
aaccctgatggcagtcctagtccactggaccctccagaacatcttttcagaatcagactt
gtttgtactatccttgatacctgtgggcaatattttgacagaggatccagcaagcggaaa
cttgattgcttccttgtatattttcagcgctatgtgtggtggaaaaaaagtctggatgtt
tggacaaaagaccacccttttcctatagacatagactatatgatcagtgatacactggaa
ctgctgagaccaaagataaagctctgcaattctctggaagaagctgtcagacaggtgcaa
gacttggaacgagaattcttaataaaattgggaattgtgaatgacaaagattccaaggat
tccattacagaaggagagaatctggaagaggatgaagaagaggaggaaggtggagcagag
acagaggaacaatctggaaatgaaagtgaagtaaatgagcctgaagaagaggagggctct
gacaatgaggaagaagagggtgaagaagaggaggaagagaacactgattatcttacggac
tccaataaggaaaatgaaactgatgaggagaatacagaagtaatgattaaaggaggagga
ctgaagcatgtcccttgtgcagaggatgaggacttcattcaggccttggataaaatgatg
ctggaaaatcttcagcaaaggagtggtgaatctgttaaagtgcatcagttggatgttgct
attcctctgcatctcaaaagtcagctgaagaagggccccccacttggaggtggggaggga
gaatcagagtctggggacacaatgccatttgtcatgttaacaagaaaaggcaacaaacag
cagtttaagatcctaaatgtacccatgtcttcccaacttgctgcaaaccattggaaccag
cagcaagcagaacaggaggagagaatgaggatgaaaaagctcactttggatatcaatgaa
cggcaggaacaagaggactatcaggaaatgttgcagtctctggcacagcgtccagctcca
gcaaatacgaatcgtgagcggcggcctcgttaccagcatccgaagggagcacctaatgca
gatctaatctttaaaaccggtgggaggagacgttga
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