Geospiza fortis (medium ground-finch): 102045280
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Entry
102045280 CDS
T03755
Symbol
RB1CC1
Name
(RefSeq) RB1 inducible coiled-coil 1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
102045280 (RB1CC1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gfr01009
]
102045280 (RB1CC1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gfr04131
]
102045280 (RB1CC1)
03029 Mitochondrial biogenesis [BR:
gfr03029
]
102045280 (RB1CC1)
Protein phosphatases and associated proteins [BR:
gfr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
102045280 (RB1CC1)
Membrane trafficking [BR:
gfr04131
]
Autophagy
Autophagosome formation proteins
ULK complex
102045280 (RB1CC1)
Mitochondrial biogenesis [BR:
gfr03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
102045280 (RB1CC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
Motif
Other DBs
NCBI-GeneID:
102045280
NCBI-ProteinID:
XP_005418367
LinkDB
All DBs
Position
Un
AA seq
1600 aa
AA seq
DB search
MKLYVFLVNTGTTLTFDTELAVQNVADLKYAIQTKYKIAIQHQVLVVSGGECMAPDRRVC
SYSAGTDTNPIFLFNKEMILCERPPAIPKTTFSAENEMELKVEESLMMPAVFHTVASRTQ
LAVEMYEVAKKLCSFCEGLVHDEHLQHQGWAAIMANLEDCTNSYQKLLYKFENVYSSYLQ
SIDDIKLKLTHLGSAVSIMAKIPLLECLTRHSYRECLGRLESSPEHGGAQSEETEDGKSP
ELVLYPNISKVNSKSMLASFCKSVEHSALEGTDPENVQDDKESGQNATVQDNEMSVELKD
DDQPSFNVSLLDWINVQDRPNDVESLVRKCFDSMSRLDPRIIQPFLAECRQTIAKLDNQN
MKAIKGLEDRLYALDQMIASCSRLVNEQKELAQGFLANQKRAENLKDPSVLPDLCLSHAN
QLMIMLTNHRKLLDIKQKCTTAKQELANNLQVRLKWCCFVMLHADQDGEKLQALLRLVTE
LLERVKVVEALSTVPQMYCLAVVEVVRRKMFIKHYREWAGALIKDGKHLYEAEKAKRESF
GKLFRKSFLRNRLFRGLDSWPPSFCTRKPRRFDSELPDISLSDLQFLQSFCPSEVQPLLR
VPILCDFEPLHQHVRALHNLVKAAQSLDEMSQTITDLLNEQKASNSQASPQSATTPRTES
TTGTAIATSSRTPPSLSLQGPLCPPVCPPAPLEELSPDSIDAHTFDFETIAHPHLEQALK
QGSLDLDSLAESPESDFMSAVNEFVIEENPVSPNVISDPQSPEMMVESLYSSVINAIDSR
RMQDTSSCVKDVSVENASLSVCVEKCRIIAQDSKVHLRGIKEDLCHFKTLVQREQCDFSN
SLKCTSLEIVNTIEKVKLSLEKTLNDKHQHELQSLKSEYETKINKLLEDGEESRKKIKKL
KGDLLGLEEVLQNKNDEFAMVKNEKEAVVCLQNEKDQKLLELECQMETQNSEIKELRQSR
EIVLEDLKKLHVENNEKLQLLRAELESLEQSHLKELESNLQARHLQEFEKVLAEHKDCLD
KLKKENEHRLEQMQESHEVVMREKQQQVEELQLKVSDLSDLRCKLEVELALKEAETDEMK
LLLEESRNQQQETLRSQVDKETENLRKEIDKLNNKIQISSDEHQVGLSELRTLMTIEKDQ
CISELVNRYEEESNLLRTELNKVTLLHQKTAEAEKRLSEQITELQSKLELEMTALEKEKT
EKLSLCEQQEKYEAIIHKLKEEKELLISNQEQDRQLLIQKLNCEKEDAVQTACKELELQR
EAAEKGLLEKILQLEMQVNQSGASQSARPLSSNLVAELQEKLQEEKMKFLEQLEEQEKRK
NEEMQNIRTSLTAEQQTNFNTVLAREKMKKENIINDLSDKLKVLTQQQEKDKDLIETLSE
DRARLLEEKKKLEEEVNKLRSSNFSPSTYLAAASEACGACAADVPTDTERLVADFGAEGR
MDSTMETSMMAVHENVHMSEEKQRIMLLERTLQLKEEENKRLNQRLMSQSMSSVSSRHSE
KIAIRDFQVGDLVLIILDERHDNYVLFTVSPTLYFLHSESLAALDLKPGECASGASRRPW
VLGKVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVPWNKKV
NT seq
4803 nt
NT seq
+upstream
nt +downstream
nt
atgaagctatatgtatttttggtcaacactggaactacccttacatttgatactgaactt
gctgtacaaaatgtggctgatctgaaatatgcaattcaaacaaagtataagattgccatt
cagcaccaagtactggttgtcagtggaggagagtgtatggcaccagacagaagagtgtgt
agttacagtgctggaacagacaccaacccaatttttttattcaacaaagaaatgatcttg
tgtgaacgtccaccagctatccccaaaaccacattttcagcagagaatgagatggaattg
aaagtagaagaatctcttatgatgcctgcagtgtttcatacagtagcatcacgaacacag
cttgctgtggaaatgtatgaggttgccaagaagctttgctccttttgtgaaggtcttgta
catgatgaacatcttcagcatcaaggctgggctgctataatggccaacttggaagattgt
acaaactcttaccaaaagctgctttacaagtttgaaaatgtgtattcaagctatttgcag
tccatagatgatatcaaattgaaacttacacacttgggttctgctgtttctatcatggcc
aagataccactgctggagtgcctaacaagacatagttacagagagtgtttaggaagactg
gagtcttcacctgaacatggaggagcacaaagtgaagaaactgaggatgggaaatctcct
gaattggtgctttatcccaatatatctaaagtgaacagtaaatcaatgttagcctcattt
tgcaagtcagttgaacattcagctttggaaggcacagatcctgaaaatgtacaagatgat
aaagaatctggtcaaaatgctactgtccaggacaatgaaatgtcagtagaattgaaagat
gatgatcagccttccttcaatgtgtctttgttagactggataaatgttcaagatagacct
aatgatgttgaatctctggtcagaaaatgttttgattccatgagcaggcttgatccaagg
atcatccagccctttctggcagaatgtcgccaaactattgccaaactagataatcagaac
atgaaggctattaaaggtcttgaggatagactctatgcattggaccagatgatagcaagc
tgcagcagactggtgaatgaacaaaaagaacttgctcagggatttttggctaatcagaag
agagctgagaacttgaaagatccttctgtgctgcctgatttgtgtttgagtcatgcaaat
cagctgatgattatgttaactaatcacagaaaactgttagatattaaacagaaatgtacc
actgccaaacaggagcttgcaaataatctgcaagtcagactgaagtggtgttgttttgta
atgcttcatgctgaccaagatggagagaaactacaagcactgcttcgtctcgtaacagag
ctcctagaaagggtcaaagttgtggaggctctcagcactgttcctcagatgtactgttta
gctgttgttgaagttgtgaggagaaaaatgttcataaaacactacagggagtgggcaggt
gctttaataaaagatgggaaacatctatatgaagctgaaaaggcaaaaagggaatctttt
ggtaaactctttaggaagtcttttctaaggaatcgtttgtttagaggacttgactcctgg
cctccatccttttgtacacgaaaacctcgcagatttgacagtgagcttccagatatctca
ttgagtgacttgcagtttttgcagtctttctgtccttcagaagtacagccattactcagg
gttcccatactttgtgactttgaacctcttcaccagcatgtacgtgctctacataacctg
gtcaaggcagcacagagtttggatgaaatgtcacaaactattacagacctgctgaatgag
caaaaggcctccaatagtcaagcatcgccacaatctgctaccacgccaaggacggaaagt
accacaggaaccgcaattgctacctcttcaagaactcctccatcactcagtcttcagggt
cccctgtgtcctcctgtgtgtcccccagctccattagaagaattgtctccggacagcatt
gatgctcacacattcgattttgaaactattgcccatccgcacttggagcaagctcttaaa
caaggatcattagacttggattcattggcagagagtccggaatctgactttatgtcagca
gtaaatgaatttgtaatagaagaaaatccagtgtctcctaatgtcataagtgacccacaa
agcccagaaatgatggtggaatctctttattcttcagttatcaatgcaatagacagtagg
cgtatgcaagatacaagttcttgtgtaaaggatgtttcagtagaaaatgcttctctcagt
gtttgtgtggagaagtgtaggattattgctcaagactcaaaggtacatttaagaggtata
aaagaagatctttgccatttcaaaacacttgtacaaagagaacagtgtgacttttctaat
tctttaaaatgtacttccttagaaatagtaaatacgattgaaaaggtaaagctttcactt
gaaaaaacactaaatgataaacatcaacatgaattgcagtctttgaaaagtgagtatgaa
actaaaattaataaattactggaggatggtgaagaaagtagaaagaaaatcaaaaagtta
aaaggtgacctgttaggtcttgaggaagttcttcagaataagaatgatgaatttgcaatg
gtaaagaatgagaaagaagctgtggtttgccttcagaatgaaaaagaccagaaattactt
gaattagaatgccaaatggagacacaaaattctgaaatcaaggaactgaggcagtcacgt
gaaattgtacttgaagacttgaaaaaacttcatgttgaaaacaacgagaaactacaactc
ctgagggcagaacttgagagtttagagcaaagtcatttaaaagaactggaaagcaaccta
caagccaggcatttacaggaatttgagaaggtcctagctgagcacaaggactgtttggat
aaattaaaaaaagagaatgagcatagacttgaacaaatgcaagaatctcatgaggtagtt
atgagagaaaaacaacaacaagtagaagagttacaactgaaggtttcagatctgtctgat
ttgaggtgcaaactagaagttgagcttgccctgaaagaagcagaaactgatgaaatgaag
cttcttttggaagaaagcagaaaccaacaacaagagaccttaagatctcaggttgacaag
gaaactgaaaacttaagaaaggagatagataaattaaacaataaaatacaaatcagcagt
gatgaacatcaagtgggcttatcagaactaaggactctgatgacaattgagaaagatcag
tgtatttctgagctagtaaataggtatgaagaagaatcaaatttgcttagaactgaatta
aataaagtaacacttcttcatcaaaaaactgctgaggcagaaaaaagactttcagagcaa
ataacagaactgcaaagtaagttagagttggaaatgactgccctagagaaggaaaaaaca
gaaaaactgtctctctgtgagcagcaggaaaaatatgaagctattatccataagctaaag
gaagagaaagaactgttaatatctaaccaagaacaagacaggcagttgctcattcagaag
ctcaattgtgaaaaagaggatgcagtacaaactgcttgtaaagagttggaattacagagg
gaagctgctgaaaaagggcttttggaaaaaatactgcaacttgagatgcaagtgaatcag
agtggagcttcacagagtgcacgtcctctctcatcaaacttagtcgctgaacttcaggag
aagcttcaggaagaaaaaatgaagttcttagagcaacttgaagaacaggagaaaagaaag
aacgaagaaatgcagaatatcagaacatcgctcactgcagagcagcagaccaactttaac
actgttctagcaagagagaaaatgaaaaaagaaaacataattaatgatcttagtgacaaa
ttaaaagtgcttacacaacagcaagaaaaagataaggatttgattgaaacactttctgaa
gatagagctcgcttacttgaagagaagaagaaacttgaagaagaagttaataaactgaga
agtagtaatttttctccatcaacctacttggcagcagcgtcagaagcttgtggagcctgt
gcagctgatgtgcccacagacacagagagattggttgctgactttggggctgaggggaga
atggattccacgatggaaaccagtatgatggctgtgcatgaaaatgttcatatgtctgaa
gaaaagcagaggataatgttgctggaaagaactttgcagttgaaagaagaggaaaataag
agattaaatcaaagattgatgtcccaaagcatgtcatcagtatcctcaagacattctgaa
aaaatagcaattagagattttcaggttggggatttggtactcattatcttggatgaaagg
catgacaactacgtcttgtttactgttagcccaaccttgtatttcttgcactcagagtcc
cttgctgcactggatctcaaaccaggtgagtgtgcatcaggtgcatctaggagaccgtgg
gtgctaggaaaagtgatggaaaaggagtattgccaggcaaaaaaggcacaaaacagattc
aaagttcctttgggtacaaaattctacagagtgaaagcagtaccatggaacaagaaagta
taa
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