Gallus gallus (chicken): 430516 Help Entry 430516            CDS       T01006                                  Symbol LIG1 Name (RefSeq) DNA ligase 1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism gga  Gallus gallus (chicken) Pathway gga03030   DNA replication gga03410   Base excision repair gga03420   Nucleotide excision repair gga03430   Mismatch repair Brite KEGG Orthology (KO) [BR:gga00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     430516 (LIG1)    03410 Base excision repair     430516 (LIG1)    03420 Nucleotide excision repair     430516 (LIG1)    03430 Mismatch repair     430516 (LIG1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:gga03032]     430516 (LIG1)    03400 DNA repair and recombination proteins [BR:gga03400]     430516 (LIG1) Enzymes [BR:gga01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      430516 (LIG1)     6.5.1.6  DNA ligase (ATP or NAD+)      430516 (LIG1)     6.5.1.7  DNA ligase (ATP, ADP or GTP)      430516 (LIG1) DNA replication proteins [BR:gga03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     430516 (LIG1)  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      430516 (LIG1) DNA repair and recombination proteins [BR:gga03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      430516 (LIG1)    NER (nucleotide excision repair)     Other NER factors      430516 (LIG1)    MMR (mismatch excision repair)     Other MMR factors      430516 (LIG1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DDR Motif Other DBs NCBI-GeneID:  430516 NCBI-ProteinID:  XP_015156079 CGNC:  53965 Ensembl:  ENSGALG00000043938 LinkDB All DBs Position 31:complement(4753745..4760914) Genome browser AA seq 775 aa AA seqDB search MQRRITSFFAPPRAADGAVPAHVQKLERRPPEETPQERRDPDGSADAASPGSSSAPVPPT SPRAPCCPPSPQQSGDRDGDSDRDSGSPASKRCRQSPSDQDKGPPPPCKSPAPNSHIPVE PSQYDPSRSGYHPVQDACWGHGRSVPYLAVARTFERIEEASSRLKIIEILTNLLRSVVAL SPSELLPCLLLCLNRPGAPSEGLELGIGETLLTRALAQATGRQLAQIRSEAQDKGDLGLV AESSRCTQRTVVPPAPLSASGVLGKLREMAAMSGNASASKKIDIIKGLFVACRHSEARYL VRSLSGKLRIGLAEQSVLTALAHAIALTPPGQEWPLAVVDAGQSMAPDARRTWLEEQSRI LKQTFCELPDYAAIVPVLLEHGLEQLPKHCGITPGVPLKPMLAQPARCVSELLKRFEEAA FTCEYKYDGERTQIHVLESGAVFIYSRNQENTTSKYPDLVQRIPKMLKPGVRSCILDAEA VAWDKVTKQLQPFQVLMTRKRKDVDAAAIKVQVCVYAFDLLYLNGEPLVREPLATRRQLL RQSFEEVEGEFLFATSMDTRSADEVSDFLDKAIKASCEGLMVKTLEVEATYEIAKRSHKW LKLKKDYLDGLGDTLDLVVIGAYLGKGKRAGIYGGFLLACYDEESEEYQSICKIGTGFTE ESLEKHYNFLKEHVLTQPRPYYRWDNAVAPDRWLAAVQVWEVKCGDLSISPVYRAAVGLV DEDKGISLRFPRFLRVRGDKKPEEATSSTQVAELYKKQQQIQNQQQAEKGDEEFY NT seq 2328 nt NT seq  +upstreamnt  +downstreamnt atgcagcggcggatcacgtctttcttcgccccccccagggctgcagatggcgccgtccca gcgcatgtgcagaagctggagcggcgccctcccgaagagaccccccaggaacgtcgggac cccgatgggagcgcggatgccgcatcccctggcagcagctctgcccctgtaccccccaca tcccctcgtgccccctgctgtcccccctccccacagcagtcaggggacagggatggagac agtgatagggacagtggctcccctgcatccaagcgctgccgtcagtcacccagtgaccag gacaagggacctccccctccctgcaaatctccagcccccaacagccatataccggtggag ccatctcagtatgaccccagcaggagtgggtaccacccagtgcaggatgcgtgctggggg catggacgcagtgtcccctacctggcggtggctcgcaccttcgagcgcatcgaggaagcc tcatcccggctgaagatcattgagatcctcaccaacctcctgcgctccgtggtggccctg tccccctccgaacttctcccctgccttcttttgtgcctcaaccgtcccggagccccctct gaggggctggagctgggcatcggcgagaccctgctcacccgtgcccttgcccaggccact ggccgccagctggctcagatccgcagtgaagcacaggataaaggggatttggggctggtg gccgaaagcagccgctgcacccaacgcacggtggtgccaccggccccgctgagtgccagt ggtgtccttggcaagctgcgggagatggctgccatgtcaggcaatgcgtctgctagcaag aagattgacatcatcaagggactgtttgttgcctgccggcactcagaggcacgatacctc gtccgatcgctcagtgggaagctacgcattgggctggctgagcagtcggtgctcactgca ctggcacacgccattgctctcaccccaccagggcaagagtggccgctggctgtggtggat gctgggcagagcatggcacctgatgcacgtagaacttggttggaggagcagagccgcatc cttaagcagactttctgcgagctgccagactatgctgccattgtcccggtgctgctggag catggcctggagcagctccccaagcattgcggcatcactccaggtgttcccttgaagccc atgctggcccaacctgcccgctgcgtcagtgagctgctgaagcgctttgaggaggctgca ttcacctgcgagtacaaatatgatggagaacgaacccagatccacgttctggagagcgga gccgtcttcatctacagccgcaaccaggagaacacaacctccaagtaccctgacctcgtc cagcgcatccccaagatgctgaagcccggtgtgcgttcgtgcatcctggatgcagaagcg gtggcttgggacaaggtcaccaagcagctgcagcctttccaggtgctgatgacgaggaag aggaaggatgtggatgctgctgccattaaggtgcaagtgtgcgtctatgcctttgatctg ctatacctcaatggggagccactggtgcgggagcccttggccacacgacgtcagttgctg cgacagtcattcgaggaagtggagggtgaattcctctttgccacctcaatggacactcgc agtgctgatgaggtctctgatttcctggacaaagccatcaaggcctcctgcgagggtctc atggtaaagacactggaggtggaagccacctacgagattgcgaagcggtcccataagtgg ctgaagctgaagaaggactacctggatggccttggggacacgctggacctcgttgtcata ggtgcctatctgggcaagggcaagcgtgcaggcatctatgggggcttcctgctggcctgc tatgacgaggagagtgaggagtaccagagcatctgcaagataggcactggtttcactgaa gagagcttggagaaacactacaacttcctcaaggaacatgtgttaactcaaccgcgtccc tattaccgctgggacaacgcagtggcccccgaccgttggctggcagctgtgcaggtctgg gaggtgaaatgtggggacctctccatttcccctgtctacagggcagctgtggggctggtg gatgaggacaagggcatctcgctgcgcttcccacggttcctgcgtgtgcgcggggacaag aaacctgaggaggccaccagcagcacgcaggtggccgagctctacaagaagcagcagcag atccagaaccagcagcaggcagagaagggggatgaggagttctattga

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