Gavialis gangeticus (Gharial): 109301914
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Entry
109301914 CDS
T07453
Symbol
COL6A1
Name
(RefSeq) collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn04510
Focal adhesion
ggn04512
ECM-receptor interaction
ggn04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109301914 (COL6A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109301914 (COL6A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
109301914 (COL6A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ggn04147
]
109301914 (COL6A1)
00536 Glycosaminoglycan binding proteins [BR:
ggn00536
]
109301914 (COL6A1)
Exosome [BR:
ggn04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
109301914 (COL6A1)
Glycosaminoglycan binding proteins [BR:
ggn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109301914 (COL6A1)
Hyaluronan
Extracellular matrix or blood plasma proteins
109301914 (COL6A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
vWA-TerF-like
Motif
Other DBs
NCBI-GeneID:
109301914
NCBI-ProteinID:
XP_019378818
LinkDB
All DBs
Position
Unknown
AA seq
1022 aa
AA seq
DB search
MRLRTFLFTFLLEVCFLWKGALAQQTELSTTVVKFEDCPVDLFFVLDTSESVALRVKPIG
DLVDQVKDFTNRFIDKLTDRYYRCDRNLVWNAGALHYSDEVQLIKGLTRMPDDKDDLKRR
VSEVKYIGKGTYTDCAIKRGIEEVLISGSNHKENKYLIVVTDGHPLEGYKEPCGGLEDAA
NEAKHLGIKVFSVAISPDHLEPRLSVIATDNNYRRNFTATSLIQAPADTENTIDTIIDMI
KNNVEQVCCSYECQPARGPPGPPGDPGYEGERGKPGLPGEKGDPGTPGPPGDLGPVGYQG
MKGDKGSRGEKGFRGSKGAKGEKGRRGIDGIDGMKGEDGYPGLPGCKGSPGFDGSQGPPG
PKGDPGAYGLKGSKGEPGVNGKAGRPGNPGNSGEKGPPGSVGPPGEKGELGDEGAPGQDG
LPGERGGNGERGPQGTSGLRGPRGDKGEPGPQGDQGREGPLGPSGDPGEAGPLGPKGYRG
EEGTIGPEGPKGGPGAPGLRGDPGLIGERGEDGFPGNGTIGFPGLPGYPGDKGNPGINGT
KGYPGPRGDEGDAGEPGTDNLVPGDRGPKGAKGHRGPEGPPGPPGPGGPPGPDECEILDI
IMKMCSCCECTCGPIDLLFVLDSSESIGLQNFQIAKDFIIRVIDRLSKDERVKFEAGESQ
VGVVQYSHDNTQELVKMGDDNIGNIGALKQAVKNLRWIAGGTYTGEALQFTKDNLLSRFT
TDKRVAIVITDGRSDTLRDTASLSSLCDVTQVVSLGIGDIFRTAPNSEQLGVISCQGTSQ
KPGLSVQRDNYAELLEDSFLQNITAHVCKEKKCPDYTCPITFAGSADITLLVDGSTSVGS
RNFEISKSFVKRLAERFLSAKKGLGDSVRVSVVQYSGKGQQKNEVEFSQNYTVIADAVDK
MQYMNDATDVNAAIRYVTNVYRQTSPSGVKKSVLIFSDGNSQGIKETDIEKAVQDALNQG
LEIYVLAVGNQVNEPNIRALVTGKSRVYEVTYGERHLFRLPDYHSLLRGVFYQTVSRKIA
VD
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgaggttaagaacgtttttgttcactttcctacttgaagtctgtttcctatggaaaggg
gcactggctcagcaaacagaactatccactacagttgtgaaatttgaagattgccctgtg
gatctgttttttgttctggatacctcagaaagtgttgctttaagggtgaagccaattgga
gatttggttgaccaagtgaaagactttaccaaccggttcattgataagttaacagacagg
tattaccgatgtgaccggaacctggtgtggaatgctggagctctgcattacagtgacgaa
gtgcagctaataaaagggctcacccgtatgcccgatgacaaggatgacctgaagaggaga
gtgtctgaagtgaagtatattgggaagggcacctacacagactgtgccatcaaaagaggg
attgaggaggtgctgatcagtggttctaatcacaaggagaataaatacctgattgtggtg
acggatggtcatcccctggaggggtacaaggagccttgcggaggactagaggatgctgct
aatgaagccaaacatctggggattaaagtgttctctgtggccatttcgcctgaccatctg
gagccaaggctgagtgtaattgctacagacaacaactatcgtcgcaattttacagcaacc
agccttatacaggccccggctgacacggaaaacacaattgacaccatcattgatatgatt
aaaaataatgtggaacaagtgtgctgctcctatgagtgccagcctgctagagggcctcca
gggccacccggggacccaggatatgagggggagagaggaaagccaggtcttcctggggag
aaaggagacccgggaacgcctggaccaccaggagaccttggacctgttggctaccagggg
atgaagggagacaaaggtagtcgaggagagaagggtttcagaggatccaagggagccaag
ggagagaagggcaggcgtggtattgatggtattgatggcatgaagggtgaagatggatat
cctgggttaccaggctgcaaaggatctccaggatttgacggatcacaaggccctcctgga
cctaagggagaccctggtgcttatggcctcaaaggatcaaagggagagcctggagttaat
ggaaaagctggtaggccaggaaatcctggaaactctggagaaaagggtccacctgggagt
gttggtccccctggagagaaaggggagctgggggatgagggagctcctggtcaggatggc
cttcctggagaaaggggcggtaatggagagagaggcccacagggcacgtctggccttcgg
gggccaagaggagacaagggtgagcctggccctcagggtgaccaaggacgagaaggacct
cttggaccatctggagatccgggtgaggctgggccacttggacccaaggggtaccgagga
gaggaaggaactattggacctgagggccctaaaggaggtcctggagcacctggattgcgt
ggagaccctggtttgataggtgaaaggggagaagatggctttccaggaaatggcacaatt
ggttttcctggcttaccaggttatccaggggacaaaggaaatcctggcattaatggcaca
aagggatatccaggtcctagaggcgatgagggagacgctggagaacctgggactgataac
ttagtgcctggtgacagaggtcccaaaggagcaaaaggtcacagaggtcctgaaggaccc
ccaggacctcctggacccggggggcctccagggccagatgaatgtgaaattttagacatc
ataatgaaaatgtgctcttgctgtgagtgcacatgcggccctatcgatcttcttttcgta
ttggacagttcagagagtatcggcctgcaaaacttccagattgccaaggatttcatcatt
agagtcattgacaggctgagtaaagatgaacgtgtaaagtttgaggctggggagtcacag
gtgggcgttgtgcagtacagccatgacaacacccaggagctggtgaaaatgggtgatgac
aacattggaaacatcggagccttgaagcaagctgtgaagaacctgaggtggatagctggt
gggacctacaccggagaagccctgcagttcaccaaggataacctgctgtcacggtttacc
acagacaagagggttgccatcgtcatcacagatggccggtcagacaccctgcgtgacacc
gcctcactctcctcgctctgtgatgtcacccaggtggtttctcttgggattggcgatatt
ttccgcacggcccctaactctgagcagttaggggtaatttcttgtcaaggcacatcccag
aaaccaggactatctgttcaaagagacaactatgctgaactgttagaagacagtttcctg
caaaacattactgcacatgtctgtaaagaaaagaaatgtccagactacacctgcccaatc
acttttgcaggatcagctgatatcacactcctggtggatggctccaccagtgtcgggagt
aggaactttgagatctccaagtcatttgtgaagcggctggcagagaggttcctgtcggca
aaaaagggtttgggtgactcagtgcgcgtctcagttgttcagtacagtggtaaaggacag
cagaaaaatgaggtggagttctcacagaactacacagtgattgccgatgcagttgataaa
atgcagtacatgaatgacgccaccgatgtcaatgcagccatcaggtatgtcactaatgtg
tatcggcagacttccccgtctggtgtcaagaagagcgtcctgatcttctcggatggtaac
tcccaagggatcaaagaaacagacatagagaaggcagtgcaagatgctctgaatcaaggc
cttgagatctatgtgctagcggtgggcaaccaagtcaatgagccaaacatccgcgccctt
gtcactgggaagagcagagtttatgaggtgacctatggggagcgccatctcttcagactg
cctgactaccattccctgctgcgtggtgtcttctaccaaacagtctccaggaagatagct
gttgactga
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