Gorilla gorilla gorilla (western lowland gorilla): 101142907
Help
Entry
101142907 CDS
T02442
Symbol
COL27A1
Name
(RefSeq) collagen alpha-1(XXVII) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ggo
Gorilla gorilla gorilla (western lowland gorilla)
Pathway
ggo04820
Cytoskeleton in muscle cells
ggo04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ggo00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
101142907 (COL27A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101142907 (COL27A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ggo00536
]
101142907 (COL27A1)
Glycosaminoglycan binding proteins [BR:
ggo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101142907 (COL27A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
101142907
NCBI-ProteinID:
XP_030870509
Ensembl:
ENSGGOG00000003717
LinkDB
All DBs
Position
9:85046851..85203875
Genome browser
AA seq
1860 aa
AA seq
DB search
MGAGSARGARGTAAAAVARGGGFLFSWILVSFACHLASTQGAPEDVDILQRLGLSWTKAG
SPAPPGVIPFQSGFIFTQRARLQAPTGTVIPAALGTELALVLSLCSHRVNHAFLFAVRSR
KHKLQLGLQFLPGKTVVHLGSRRSVAFNLDMHDGRWHHLALELRGHTVTLVTACGQRRVP
VLLPFHRDPALDPGGSFLFGKMNPHAVQFEGALCQFSIYPVTQVAHNYCTHLRKQCGQAD
TYQSPLGPLFSQDSGRPFTFQSDLALLGLENLTTATPALGSLPAGRGPRRTVAPTTPTKP
QRTSPTNPHQHITVGGPAQTPLLPAKLSASNALDPVLPASVGGSTRTPRPVAAQPSQKIT
ATKIPKSLPTKPSAPSTSIVPIKSPHPTQKTAPSSFTKSAPPTQKQVPPTSRPVPAKVSR
PAEKPIQRNPGMPRPPPPSTRPLPPTTSSSKKPIPTLARTEAKITSHASKPASARTSTHK
PPPFTALSSSPAPTPGSTRSTRPPATMLPPTSGTSTPRTAPAVPTPGSAPTGSKKPTGSE
ASKKAGPKSSPQKPVPLRPGKAARDVPLSDLTTRPSPRQPQPSQQTTPALVLAPARFLSS
SPRPTSSGYSFFHLAGSTPFPLLMGPPGPKGDCGLPGPPGLPGLPGIPGARGPRGPPGPY
GNPGLPGPPGAKGQKGDPGLSPGKAHDGAKGDMGLPGLSGNPGPPGRKGHKGYPGPAGHP
GEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVP
GKRGKMGMPGFPGVFGERGPPGLDGNPGELGLPGPPGVPGLIGDLGVLGPIGYPGPKGMK
GLMGSVGEPGLKGDKGEQGVPGVSGDPGFQGDKGSQGLPGFPGARGKPGPLGKVGDKGSI
GFPGPPGPEGFPGDIGPPGDNGPEGMKGKPGARGLPGPRGQLGPEGDEGPMGPPGAPGLE
GQPGRKGFPGRPGLDGVKGEPGDPGRPGPVGEQGFMGFIGLVGEPGIVGEKGDRGMMGPP
GVPGPKGSMGHPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSR
GLKGPPGPQGRPGRPGQQGVAGERGHLGSRGFPGIPGPSGPPGTKGLPGEPGPQGPQGPI
GPPGEMGPKGPPGAVGEPGLPGEAGMKGDLGPLGTPGEQGLIGQRGEPGLEGDSGPMGPD
GLKGDRGDPGPDGEHGEKGQEGLMGEDGPPGPPGVTGVRGPEGKSGKQGEKGRTGAKGAK
GYQGQLGEMGVPGDPGPPGTPGPKGSRGSLGATGAPGRMGAQGEPGLAGYDGHKGIVGPL
GPPGPKGEKGEQGEDGKAEGPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQ
QGQPGHPGPRGRPGPKGSKGAEGPKGKQGKAGAPGRRGVQGLQGLPGPRGVVGRQGLEGI
AGPDGLPGRDGQAGQQGEQGDDGDPGPMGPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQ
LGPPGKRGTEGRTGLPGNQGEPGSKGQPGDSGEMGFPGMAGLFGPKGPPGDIGFKGIQGP
RGPPGLMGKEGIVGPLGILGPSGLPGPKGDKGSRGDWGLQGPRGPPGPRGRPGPPGPPGG
PIQLQQDDLGAAFQTWMDTSGALRPESYSYPDRLVLDQGGEIFKTLHYLSNLIQSIKTPL
GTKENPARVCRDLMDCEQKMVDGTYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKV
EFAISRVQMNFLHLLSSEVTQHITIHCLNMTVWQEGTGQTLAKQAVRFRAWNGQIFEAGG
QFRPEVSMDGCKVQDGRWHQTLFTFRTQDPQQLPIISVDNLPPASSGKQYRLEVGPACFL
NT seq
5583 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgggatcggcgcggggggcccgaggcacagcggcggcggcggtggcgcgcggg
ggggggtttctcttctcctggatcttagtctcgtttgcctgtcacctggcctccacccaa
ggagctcctgaagatgtggacatcctccagcggctgggcctcagctggacgaaggccggg
agccctgcacccccgggagtcattcctttccagtcgggcttcatctttacgcagcgggcc
cggctccaggctcccacgggcaccgtcattcctgccgccctgggcacagagctggcgctg
gtgctgagcctctgctcccaccgggtgaaccatgccttcctcttcgctgtccgcagccgg
aaacacaagctgcagctgggcctgcagttcctccccggcaagacggtcgtccacctcggg
tcccggcgctcagtggccttcaatctcgacatgcacgacgggcgctggcaccacctggcc
ctcgagctccgaggccacacagtcactctggtgactgcctgcgggcagcgccgggtgcct
gtcctgctgcctttccacagggaccctgcactcgaccctgggggctccttcctctttggg
aagatgaacccgcatgcagtccagtttgaaggtgctctctgccagttcagtatctaccct
gtgacgcaggtcgctcacaattactgtacccacctgaggaagcagtgtggacaggctgac
acgtaccagtccccactgggacctctcttctcccaagactctggcagaccttttaccttc
cagtccgacctcgccctgctaggcctggagaacttgaccactgccacaccagccctgggg
tcactgccagcaggcaggggacccaggaggactgtggcacccaccacgcccaccaagccc
caaaggactagccccacaaaccctcaccagcatatcacggtgggaggcccagcccaaacc
ccactgctacctgccaagctgtcagccagtaacgcacttgatcccgtgctcccagcctct
gttggcggctctaccagaacgcctcgccctgtggccgctcaaccatcacagaagatcaca
gccaccaaaatccccaaaagcctccctaccaagccttcggccccttctacttcaattgtc
cccatcaaaagcccccatcctacccagaaaacagctccatcttcatttacaaagtcagcc
ccacccactcagaagcaagtgccacctacttcccgtccagttcctgccaaagtctcccgt
cccgcagagaagcccatccagaggaacccgggaatgcccaggcccccaccgcccagcacc
cggcccctacctcctaccaccagctcctctaaaaaacccattcccacactagctcggact
gaggccaagataaccagccatgccagtaagccagcctctgcccgcaccagcacccacaaa
cctcccccatttactgctttatcctcatctcctgcccctactcctggttctaccaggagt
actcggccaccagctacgatgttacctccaacttcgggcaccagcactcccagaacagca
cctgccgtccccactcctggctcagctcccactggaagcaagaagcccactggatcggaa
gcctcaaagaaagccggacccaagagcagcccccagaagcctgtccccctcagacctggg
aaggcagccagggatgtccccttgagtgatctgacaaccaggcctagccccagacagccc
cagcccagtcagcagaccaccccggccctggtgttggccccggcgcgattcctgtcctcc
agcccccggcccacgagcagtggctattcattcttccacctggcaggatctacgcctttc
cctctgctaatggggcctccgggacccaagggagactgtggtttgccgggtccccctggg
ctacctgggctacctggaatccctggtgcacgtgggcctcggggtcctcctgggccttat
ggaaatccaggtctccccggccctcctggagccaaaggacagaaaggggacccagggctc
tcaccaggaaaggcccacgatggggcaaagggcgacatgggcttgcctgggctctccggg
aatccaggacctccgggacgaaagggacacaagggctatcctggaccggcagggcacccc
ggagaacaggggcagccaggacctgagggcagcccaggggccaaaggttaccctggcagg
caggggttacctggaccggtaggagatcccggccccaaaggcagcaggggctacattggg
ctcccagggctcttcggcctgccagggtctgatggagaacgaggcctgcctggcgttcct
ggcaagaggggcaagatgggtatgccggggtttcctggagtctttggggaaagaggccct
cccggactggatggaaaccctggagaactgggcctgccaggcccccctggagtccccggc
ctcattggtgacttaggagtgttgggtcccattggctacccaggacccaagggcatgaag
ggactgatgggcagcgtgggggagcccggactgaaaggtgataagggtgaacaaggggtt
ccaggtgtgtcaggagatcccggattccaaggagacaaggggagccaggggttgccaggg
ttccccggtgcacgggggaagccagggcctctgggcaaagtcggagacaaaggatccatt
gggtttcccgggccccctggacccgagggattcccaggagacatcggccctcctggcgac
aatggcccagaaggcatgaagggtaagcctggagcccgaggcctgccgggaccccgtggg
cagctggggcccgagggagatgagggacccatggggccgccaggggcccctggcttggag
ggtcagcctggcaggaaggggtttcctgggaggcccggcctggatggcgtgaagggggaa
ccaggggatcctggtcggccggggcctgtgggagagcagggatttatgggattcattggt
ctggtcggggagccaggaatcgtgggagaaaagggtgatcgtggcatgatgggaccccca
ggcgtgcctggacccaaggggtcgatgggtcatcctggaatgccaggtggtatggggacc
cctggagagcctggaccccagggtcctccaggatctcgaggcccaccaggcatgagggga
gcaaagggacgtcggggtccccgaggaccggacggaccagctggggagcaagggtccagg
ggcctgaagggccctccaggaccccagggcagaccgggccggcctggacagcagggtgtg
gctggtgagcgagggcacttgggctcgagaggctttcctggcatcccgggtccctcaggc
cccccaggcaccaagggcctcccaggagaaccgggccctcagggaccccaggggccaatt
gggcctccaggagagatgggacccaaggggccgccaggtgcagtgggagaaccgggcctt
cctggggaagccgggatgaagggtgaccttggacccctgggcactcctggggagcagggc
ctcattgggcaacggggagagccaggcctcgagggtgacagtggccccatgggacctgat
gggctgaagggggacaggggagacccagggcctgatggagaacatggcgagaaaggccag
gaagggctgatgggtgaggacgggccccccggcccccctggcgtcactggtgtccggggt
cctgaaggaaaatcagggaagcaaggcgagaagggccgcactggagccaagggcgccaag
ggctaccaaggacagctgggtgagatgggcgtccctggagaccctggaccccctggcact
ccaggccctaaagggtcccggggcagcctgggagcaacgggtgctccgggacgcatgggg
gcccaaggagaaccgggactggctggttatgatggacacaaaggcattgtgggacccctc
ggacctcctggaccaaaaggtgaaaagggggagcagggcgaggacggcaaggctgagggg
ccccctgggccacctggagatcggggccctgtgggtgatcgaggagaccgcggggaaccg
ggggaccctgggtaccctggacaggagggtgtgcaaggcctccgtggaaagccaggccag
cagggccaacccgggcatccgggaccccgggggcggccgggacccaaaggatcgaaaggc
gcagagggaccaaagggaaagcaaggcaaggcgggggccccaggccggaggggggtccag
ggcctgcaggggctgccagggccccggggcgtggtggggagacagggcctcgagggcatc
gctggaccagatgggcttcctggcagggacgggcaagcaggacagcagggggagcaggga
gacgatggggaccctggccccatgggccctgctgggaagagaggaaatccaggtgtggcc
ggcttacctggagcacagggacccccaggattcaagggtgagagtgggttacccggacag
ctgggtccccctggcaagcgaggaacagagggcagaacggggctccctggaaaccagggg
gagcctgggtccaaaggccagccgggcgactctggcgaaatgggcttcccaggaatggca
ggtctcttcggacccaagggcccgcctggagacattggcttcaaaggcatccagggccct
cgggggccacctggcttgatgggaaaggaaggcatcgtcgggcccctcggaatcctggga
ccttcgggactcccgggtccgaagggtgacaaaggcagccgtggggactggggattgcaa
ggtccgaggggtcctcccggccccagagggcggcccggccccccgggtcctccagggggt
cctatccaattgcaacaagatgatcttggggcagctttccagacgtggatggacaccagt
ggagcactcaggccagagagttacagctatccggaccggctggtgctggaccagggagga
gagatctttaaaaccttacactacctcagcaacctcatccagagcattaagacgcccctg
ggcaccaaagagaaccccgcccgggtctgcagggacctcatggactgtgagcagaagatg
gtggatggtacctactgggtggatccaaaccttggctgctcctctgacaccatcgaggtc
tcctgcaacttcactcatggtggacagacgtgtctcaagcccatcacggcctccaaggtc
gagtttgccatcagccgggtccagatgaatttcctgcacctgctaagctccgaggtgacc
cagcacatcaccatccactgccttaacatgactgtgtggcaggagggcactgggcagacc
ctagccaagcaggccgtacgcttccgggcctggaatggacagatttttgaagctgggggt
cagttccggcccgaggtgtccatggatggctgcaaggtccaagatggccgctggcatcag
acactcttcaccttccggacccaagacccccaacagctgcccattatcagtgtggacaac
ctccctcctgcctcatcagggaagcagtaccgcctggaagttggacctgcgtgcttcctc
tga
DBGET
integrated database retrieval system
