Gossypium hirsutum (upland cotton): 107887045
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Entry
107887045 CDS
T04793
Name
(RefSeq) pre-mRNA-splicing factor CWC22 homolog
KO
K13100
pre-mRNA-splicing factor CWC22
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107887045
Spliceosome [BR:
ghi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107887045
Complex C
U4/U6.U5 tri-SnRNP related factors
107887045
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Gene cluster
GFIT
Motif
Pfam:
MA3
Motif
Other DBs
NCBI-GeneID:
107887045
NCBI-ProteinID:
XP_040954117
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Position
A03:36615928..36620448
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AA seq
872 aa
AA seq
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MARRYNESSSDDSRDESGERGNRRKRYSRSDRERGRRERGREREHGDENGEKRQRENSGS
FGEEEGKRANRERSEESERIHADNDSKDRQREKRPRSSDEEDGKHSYRDRRGERERIHDG
DDDGKDRRREEGSRSSDEEDDKPSFRDRRHERDRIRDGENDSKARRKDTQEESSESSDKS
EEERRAKRDRSGKRDRCHRHDTGHRDWHNDKQREEDRYRNRDWWRHSRHDSDDDDRGRRS
HRNTELENRSQRRDNDNQPSRRDRDDNSFKEKEEGEIKQKQPAFHQTNLNGDTSNLGRSG
GVYIPPFKLARMMKETQDKSSVEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENL
IRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFPEVGELLLRRIVLQLKRAYKRNDK
PQLLAAVKFVAHLVNQQVAHEIIALELLTVLLENPTDDSVEVAVGFVTECGSLLQDLSPK
GLHGIFERFRGILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVEQEDQLTHEI
SLQDEIDPEITLDIFKPDPLFLENEKRYEELKKTILGEDSEDEEGSDAGSGDEDDDEDDD
ESDEEDEEQMKIQDETETNLINLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIM
LLECCSQERTYLRYYGLLGQRFCMINKVYQENFDKCFVQQYSMIHRLETNKLRNVAKFFA
HLLGTDALPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRRLNERLSDPTMQDSV
ESIFPRDNPKNTRFSINFFTSIGLGGITENLREYLKNMPRLIMQQQEPASESESGDESGS
FSSSDSESASSEPESDSSSSDEGERRRKKRRK
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atggctagaagatacaatgaatcgagcagcgatgattcgagagatgagagtggggaacgt
ggtaatcgtcgcaaaaggtattctaggtcagatagggaaaggggaagacgagaaagagga
agagaaagagaacatggcgatgagaatggggagaagcggcagagggaaaattctggatct
tttggtgaagaagaaggcaagcgtgctaatagagagaggagcgaagaaagtgaaagaatt
catgctgataatgatagtaaggataggcagagagaaaaacgtcctagatcctctgatgaa
gaagatggcaagcattcctatagagatagaaggggtgaaagagagagaattcatgacggt
gatgatgatggtaaggataggcggagagaagaagggtcaagatcttctgatgaagaagat
gacaagccttcctttagggatagaaggcatgaaagagatagaattcgtgacggtgaaaat
gattccaaggctaggcggaaagatacacaggaggaaagttctgaatcttctgataagtca
gaagaagagaggcgagccaagagggacaggagtggaaaaagggatagatgtcataggcat
gacactggacatagggattggcataatgataagcagcgggaagaagataggtatagaaat
agggactggtggcgtcattcacggcatgattctgatgatgatgatcgcggaagaaggtcc
catagaaatacagaacttgagaatagaagtcaaaggagagacaatgataatcaaccaagc
cgtagagacagagatgataatagctttaaggagaaagaggaaggagaaatcaagcagaaa
caaccagcttttcatcaaaccaacttgaatggtgatacctcgaatttaggtaggagtgga
ggagtttacattcctccatttaaattagctagaatgatgaaagagacacaggataagagc
agtgttgagtatcagcgattaacatgggatgccctcagaaaaagtatcaatggtcttgtt
aacaaagtaaatgctactaatatcaagaatattattccggaactctttgctgagaatctt
attcgaggaagaggtctcttttgtcgttcgtgcatgaaatctcagatggcatctccaggt
ttcactgatgtttttgctgcactggtggctgttgttaacaccaagtttcctgaggtgggg
gagctattgttgagaaggattgttttgcagcttaagagagcatataagcggaatgacaag
cctcaattattggcagctgttaaatttgtagctcatcttgtgaaccaacaagtggctcac
gagattattgctttggaactactcactgttttgctggaaaaccctactgatgacagtgtt
gaggtagctgttggttttgttactgaatgtggttccttacttcaggatctttcaccaaaa
ggcctacatggtatttttgagcgttttcgggggattcttcatgagggagagatagataaa
cgtgttcaatttcttatagagggcttatttgctataaggaaagcaaagtttcagggttat
cctgctgttcgtccagaactagaccttgttgagcaggaggaccaattaactcatgagatc
tctctccaagatgagatagatccggagatcacccttgacatttttaaaccagatcctcta
ttcttggagaatgaaaagcgctatgaagagttgaagaaaaccatccttggtgaggactcc
gaggatgaagagggttcagatgcaggttcaggtgacgaggatgatgatgaggatgacgat
gaatctgacgaggaagatgaagagcagatgaaaatacaagatgagacagagacaaatctt
ataaatctccggaggacaatctacctgacaatcatgtccagtgtagattttgaggaggct
ggccacaagctgctgaaaattaagcttgagccagggcaagagatggagttatgcattatg
ctcttggaatgctgcagtcaagagagaacgtaccttcgatattatggccttctggggcag
cggttttgcatgatcaataaagtctatcaggaaaactttgataaatgctttgttcagcag
tattctatgatccatcggcttgaaacaaacaaattacgtaatgtggcaaaattttttgca
catttactgggcactgatgctctgccgtggcatgttctagcctacatacgcttaaccgag
gaggatacaacctcatcttctcgtatatttatcaagatcctcttccaggagctgtcagag
catcttggaatccgcagactgaatgagcggctctcagatcctacaatgcaggactcagtt
gaatctattttcccgagggataatcccaagaacacaaggttttcgatcaactttttcact
tccattgggcttggtggtataactgagaatttgcgtgagtatttgaagaacatgccccgg
cttatcatgcaacaacaagaaccggcatctgaatcagaatcaggtgatgagtctgggagc
tttagttcatcggattcagaaagtgctagttcagagccggagtcagattcgtcaagttct
gatgagggtgagaggcgcaggaagaagagaaggaaatga
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