Gossypium hirsutum (upland cotton): 107889151
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Entry
107889151 CDS
T04793
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
107889151
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
107889151
Membrane trafficking [BR:
ghi04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
107889151
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Clathrin
WD40
zf-RING_2
ANAPC4_WD40
zf-C3H2C3
Motif
Other DBs
NCBI-GeneID:
107889151
NCBI-ProteinID:
XP_016668977
UniProt:
A0A1U8HSH6
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Position
A09:complement(63367984..63376111)
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AA seq
951 aa
AA seq
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MSPFPSENGVEGDDEREEEEDEDVDDDEEEEEEAEEDEEEPRLKYQRMGGSIPSLLSGEA
ASCISVAERMIALGTHDGTVHILDFLGNQVKEFAAHSAAVNDLSFDIEGEYIGSCSDDGS
VVLNSLFTDEKLKFEYHRPMKAIALDPDYARKTSRRFVTGGLAGHLYFNTKKWLGYKDQV
LHSGEGPIHAVKWRTSLIAWANDAGVKVYDAANDQRITFIERPRGTPHPEILLPHLVWQD
DTLLVIGWGTSVKIAAIRTNLNKGTNGTYKRVMSNTNQVDIVASFQTSYYISGIAPFADA
LVVLAYIPSEDGEKEFSSAMPSRQQGNAQRPEVRIVSWNNDELATDALPVHGFEHYKAKD
YSLAHAPFSGSSYAGGQWAAGDEPIYYIVSPKDVVIAKPRDAEDHISWLLQHGWHEKALA
AVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSATAWERWVFHFAHLRQL
PVLVPYMPTENPRLRDTAYEVALVALATNPSFHKDLLSTVKSWPRVIYSALPVISAIEPQ
LNTSSMTDALKEALAELYVINGQYEKAFSLYADLMKPDIFDFIEKHNLHDSIREKVVQLM
MVDCKQAVNSLIQNRDLIAPSEVVSQLLNTRNKCDSRYFLHLYLHSLFEVNPHAGKDFHD
MQVELYVEYEPKMLLPFLRSSQHYTLEKAYEICDRRDLLREQVFILGRMGNSKQALAVII
NELGDIEEAVEFVTMQHDDDLWEELIHQCLHKPEMVGVLLEHTVGNLDPLYIVNMVPNGL
EIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLSVKYYNEAKRAVCLSNEEDDARS
KRDASRASQVITPSVRNMEVKSKTRGGGRCCMCFDPFSIQNVSVVVFFCCHAYHTTCLME
STETNSTNKKGTGGPSEGLYEYEYEDEQEDDNGSEAGGPRMRCILCTTATS
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atgtctcccttcccatccgaaaacggcgtcgaaggagacgacgagagagaagaagaagaa
gacgaagatgtagatgatgatgaagaagaagaagaagaagcggaggaggacgaagaggag
cccaggcttaagtatcaaagaatgggaggtagcatcccttccctgctctcaggcgaggcc
gcctcctgtatctccgtcgccgaacgcatgatcgcactcggaacgcacgatggaaccgtt
catatcctcgactttttgggaaatcaggttaaggaatttgctgctcattcagctgcagtg
aatgaccttagttttgatatagaaggtgaatatattggaagctgttcagatgatggctct
gttgtactaaatagtcttttcaccgacgagaaattgaaatttgagtatcatcgtcctatg
aaagccattgcacttgaccctgattatgcaagaaaaacatctaggagatttgtaactggt
ggtttagctggtcacttgtattttaataccaaaaagtggcttggctataaggatcaggtt
ttgcactcaggtgaaggtccaatccatgcagtgaaatggagaacgagtctcattgcttgg
gctaatgatgcgggagtaaaagtttatgatgctgcaaatgatcagcggattacatttata
gaaagaccaagagggactcctcatcctgaaatcttgctccctcatttagtttggcaggat
gatactttattggtgattggctggggtacttctgttaaaattgctgcaataagaacaaat
ctgaacaagggaacaaatggaacatataagcgtgttatgtctaacacgaaccaagtagat
attgtggcatcgtttcaaaccagctattatatatcagggattgcgccttttgctgatgct
ttggttgttctagcctatattcctagtgaagatggagagaaggaatttagcagtgcaatg
ccatcaagacagcagggaaatgcacagagaccagaggtacgtatagtgtcttggaacaat
gatgaattggcaactgatgctctacctgtacatggctttgagcactataaagcaaaggac
tattccttggcccatgctcccttctcaggcagcagttatgccggtggacagtgggctgct
ggtgatgaaccaatatattatattgtatcgccaaaggatgttgtcatagcaaaacctagg
gatgctgaggatcacatttcatggcttcttcaacatggatggcatgaaaaagctttagca
gcagttgaggctgggcagggacgaagtgaacttcttgatgaagtgggatctagatacctt
gatcatttgattgtggaaaggaaatatgctgaggctgcatccttgtgtcctaaattgttg
cgaggatctgctacagcttgggaaagatgggtattccattttgctcatctccgtcagctt
cctgtattggttccatatatgccaacagaaaaccccaggctgcgtgatactgcttatgag
gttgctcttgtggctctggcaacaaatccatcatttcataaggatcttttgtcaactgtt
aaatcatggccacgtgtcatttattccgcattgcctgtcatttctgcaattgagccccag
ctaaatacttcgtcaatgactgatgcccttaaagaggcacttgcagagttgtatgttatt
aatgggcagtatgagaaagctttttcactgtatgctgatctcatgaagccagatatattt
gacttcattgaaaagcacaacttgcatgattctattcgtgaaaaggttgtgcagttgatg
atggttgattgtaagcaagcggttaattcgttgatccaaaatagggacttaattgcacca
tctgaagttgtttcacagcttctgaatactagaaataagtgtgattcgagatatttcttg
catttatatctgcattccttgtttgaagtaaacccgcatgctggcaaggattttcatgat
atgcaggtggagctttatgttgagtatgagccaaagatgctactcccttttcttcgcagt
agtcaacattacacattggagaaggcgtatgagatctgtgacagaagagatcttttaagg
gagcaagtattcatccttggaagaatggggaattcaaaacaagctcttgctgtcatcata
aatgaattaggagatatagaagaggctgtagaatttgtgaccatgcagcatgatgacgat
ctttgggaagaactaattcatcaatgcctccataaaccagaaatggtgggcgtcttattg
gaacacactgttggcaatcttgatcctctctatattgtaaatatggtgcccaatggccta
gagatacctcggctgagggatcgtctagtcaaaattattactgattacagaactgaaact
tctctcagacatggctgcaacgatatactcaaggctgattgtgttaacctgtcggtaaaa
tactacaatgaagcgaaacgagcagtttgcttgagtaatgaagaagatgatgcacgatcc
aagagggatgccagtagagcttctcaagtcataacacctagtgtaagaaatatggaggtt
aaatctaaaacaaggggaggtggcagatgttgcatgtgttttgatcctttctcgatacaa
aacgtatcagtcgtcgtgttcttttgctgccatgcttatcacacgacttgcttgatggaa
tctactgaaactaatagcaccaacaaaaaagggactggaggtccctctgaggggttatat
gagtatgagtatgaggacgagcaggaggatgacaatggtagcgaggctggtggtcctcgg
atgcgatgtattctatgtactacagcgacgagttaa
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