Gossypium hirsutum (upland cotton): 107890843
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Entry
107890843 CDS
T04793
Name
(RefSeq) RNA-binding protein 39-like
KO
K13091
RNA-binding protein 23/39
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107890843
Spliceosome [BR:
ghi03041
]
Common components
Common spliceosomal components
General mRNP proteins
107890843
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_7
Motif
Other DBs
NCBI-GeneID:
107890843
NCBI-ProteinID:
XP_040938241
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All DBs
Position
A11:complement(69173260..69180099)
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AA seq
613 aa
AA seq
DB search
MDFDEYEYLEKTVEEQEDPKKTKDRGGSEDKSERSYRKRDGDREEEDDEGKRSSKKSRSG
RDEDDEERRDRDKDRHRSSRDRDRERERDRDKDLERRGSREREKERERERREKDKEKERD
RREKEKERERREREKEKEKEREVDRRERSSSRSRRHESDREIERERERDRRERSSSRSRR
HESDRELERERERDRRERSSSRLRRHESERDQEREREIDIRDSRRFKDKKDAVEPEADPE
RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPM
AIALSGQLLLGQPVMVKPSEAEKNLVQSNTSGAGAGGVAGPYGAVDRKLYVGNLHFNMTE
MQLRQIFEPFGPVELVQLPLDLETGQCKGFGFVQFAQLEHAKAAQSALNGKLEIVGRTIK
VSSVTDHVVTQDTTAKSADFDDDEGGGLALNAQSRALLMQKLDRSGIATSITSSLGVPLV
NGSAPNQQATLPVNGQGAYPAPVLQPIMSTTALEPIGQPSECLLLKNMFDPTTETEPDFD
LDIKEDVEEECSKYGRVKHIYVDKNSGGCVYLRFESTEAAGKAQRAMHMRWFAGRSISAL
FMQPHEYEARFKG
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggatttcgacgagtacgagtatttggaaaaaaccgttgaggagcaggaagatccgaag
aagacgaaagacagaggaggatcggaggataagagcgagagaagctataggaagagagat
ggagatagagaggaagaggatgacgagggcaagaggagcagcaagaaatcgagaagcggc
cgcgatgaggacgacgaggagaggcgagatcgggataaggaccgccatagaagcagccgc
gacagggatagggaaagggagagagatagagataaggatttagagaggaggggtagcaga
gagagggagaaggaaagggagagagaaagaagagaaaaagataaggagaaagagagggat
aggagagagaaggaaaaggagagagagagaagggaaagagagaaggaaaaggagaaagag
agggaggtagaccggagagagagaagcagtagtaggtcgaggaggcacgaaagtgatcgt
gagattgagagggaacgggagagagataggagagagaggagcagtagtaggtcgaggagg
cacgagagtgatcgtgagctagagagggagcgggagagagataggagagagagaagcagt
agtaggttgaggagacacgagagtgaacgcgatcaagagagggaacgtgaaattgacatc
agagatagcaggagatttaaggataagaaagatgcagtggagcctgaggctgatcctgag
agggaccagagaactgtttttgcttatcagatgcctctaaaagcaactgagagagatgtc
tatgaattcttctcaaaagcaggcaaggtgagggatgttcggctgatcatggatagaaat
tcaagaagatcaaagggggttgggtacattgagttttatgatgtgatgtctgtgccaatg
gcaatcgcattgtctggtcaactgcttcttggtcaacctgtgatggttaaaccttcagag
gccgaaaagaatcttgttcagtccaatacttctggtgcaggcgcaggtggtgttgctgga
ccatatggagctgttgatagaaaactatatgtagggaacttgcattttaatatgacagaa
atgcagcttagacagatatttgaaccttttggacctgtggagcttgtgcaactaccactt
gaccttgagactgggcagtgcaaaggttttgggtttgtccagtttgctcaacttgaacat
gcaaaagcagctcaaagtgccttgaacgggaaactggagattgttggtcgaaccattaag
gtttcatctgttacagatcatgttgttacccaagatactacagcaaaatctgcagacttt
gatgatgatgagggcggtggcttggccttgaacgcacaatcaagagcgttgcttatgcag
aaactggatcgctctggtattgcaacaagcattacgagctctcttggagtaccccttgtt
aatgggtctgctccaaatcaacaggcaacattaccagtcaatggccaaggggcatatcca
gcaccggttctacagccaatcatgtctactacagcccttgaacctattggacagcccagc
gagtgtttgctgttgaagaatatgtttgatcctacaactgagacggaacctgattttgat
ttggatattaaagaggatgttgaagaagaatgcagcaaatatggcagggtgaagcatatt
tatgtggacaaaaacagtggcggttgtgtctatcttcgatttgaatcaacagaagcagcg
ggtaaagctcaacgtgcaatgcacatgagatggtttgcaggcagatcaatatcagcctta
tttatgcaaccccatgaatatgaagcgaggtttaaaggttga
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