Gossypium hirsutum (upland cotton): 107891161
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Entry
107891161 CDS
T04793
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107891161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107891161
Spliceosome [BR:
ghi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
107891161
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
107891161
NCBI-ProteinID:
XP_016671340
UniProt:
A0A1U8HZB1
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Position
D06:60855503..60860392
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AA seq
762 aa
AA seq
DB search
MDKDKHATKRSRDRDGRHHRDSDHHHDSRDSHRRSDHRSSTSRRDERERSFEREGSRDRK
HREGSYEEVEAKRKRKEREESEERGEKRSKLGEENRREKRERRRFGDKAKEDDEIEFSNG
ANGGDPVQNGAAQASLPKTGHPLPTKVSSISTAENKAYSVTGSHEVTGSSTDGSSSTGKS
GANLSLDALAKAKKALQMQKELAEKLKKIPSLNKGPSSSSVVTTGTVQRPVSTVATSVAT
GPSSSSVPPASAAVASVKPPTTGMPAVPGLESIPNLEAVKRAQELAAKMGFRQDPQFAPL
INLFPGQVQVDVPVAQKPTKAPLLRVDALGREIDEHGNIINVTKPSNLSTLKVNINKQKK
DAFQILKPELEVDPESNPHFDARMGIDKNKLLRPKRMTFQFVEEGKWSKDAEVIKLKSQF
GEAKAKELKAKQAQLAKAKADINPNLIEVSERIITKEKPKDPIPEIEWWDLPILVSGSYD
DIPDGVLCEDKLKKEKITIYVEHPRPIEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLARE
KDKQEMIRQGLIEPPKPKVKLSNLMKVLGSEATQDPTKLEMEIRSAAAEREQAHVDRNIA
RKLTPAERREKKERKLFDDPNTVETIVSVYRINDLSDPKTRFKVDVNAQENRLTGCAVIS
EGITVIVVEGGSKSIKRYGKLMLRRINWAEAVKDDKDGDEDEDEEKPPNKCVLVWQGSVA
KSSFNRFSVHECITEAAAKKVFADARVAHYWDLAVNFSENDF
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atggacaaagataaacacgcaaccaaacgctcccgagaccgcgacggccggcatcaccgt
gactccgatcaccaccacgacagccgcgattcccaccggcgatcggatcatagatcttcc
acatcgcgccgtgacgagcgcgagagatcttttgagagggaaggatcgagagataggaag
catcgcgagggttcctatgaagaagttgaagcgaagaggaagaggaaagagagggaagag
agtgaggagaggggggagaagaggagtaaacttggagaagaaaatagaagagaaaagaga
gagaggaggagatttggggataaggctaaagaagatgatgaaattgagttctccaatggc
gccaatggtggtgatccagttcaaaatggtgctgctcaggcatcattaccgaagactggt
cacccccttcctaccaaggtatcttcgatttctactgctgaaaataaagcatatagtgtt
accggatctcatgaggttactggatctagtacagatggctcttcttctactgggaaaagt
ggtgctaacctctctcttgatgccttagccaaagcgaaaaaggctttacaaatgcagaaa
gaattagctgagaaactgaagaagataccctcattgaacaaaggccctagctcgagttca
gtagtgactactggaacagttcaacgaccagtctcaactgtggctacatctgttgccact
ggaccatcaagctcatctgttccccctgcctctgcagcagtagcttctgtgaagccacct
actactggcatgcctgctgttccgggccttgagtcaatacccaatttagaagctgttaaa
cgtgctcaagagctggctgctaagatgggattccgccaggaccctcagtttgctcctcta
ataaacttgtttcccggacaggtgcaagtagatgttccagttgcgcagaaacctacgaag
gcacctcttctccgtgttgatgcacttggtagagaaattgatgagcacggtaatatcata
aatgtgactaaaccaagtaatcttagcaccctcaaggtcaacattaacaagcaaaagaaa
gatgcattccagatccttaaacctgaactggaggtggatccagaatcaaatccacatttt
gatgcacggatgggaatcgataagaacaagcttcttagaccaaaaaggatgacttttcag
tttgtagaggaagggaaatggtcaaaagatgcagaggtcatcaaattgaagagtcaattt
ggagaagcaaaagcgaaagagctaaaagcaaagcaagcacaattggcaaaggcaaaggct
gatataaatccaaatttaattgaggtgtcggaaagaattataacaaaggagaaaccaaaa
gacccaattcctgaaatagagtggtgggatttacctattctggtttcgggttcctatgat
gatatccctgatggtgtgctgtgtgaagataaactgaagaaggagaaaatcacaatatat
gttgaacatcctcgtccgattgagcctcctgctgagccagctcccccacctcctcagccc
ctgaagctaaccaagaaggagcagaagaaacttcggactcagcgacgtctggcccgggag
aaggataaacaggagatgattagacaaggcttgatagaacctccaaagccaaaagttaag
ttgagcaatttaatgaaagttttaggctccgaagctacccaagatcctactaagcttgaa
atggaaatccgaagtgctgctgctgagcgggagcaagctcatgtcgacaggaacattgct
cgcaagcttactcctgctgagcgccgtgaaaagaaagagagaaagctttttgatgatcca
aatacggtggagactattgtttcggtttacaggatcaatgatctctctgatcccaagacc
cgcttcaaagttgatgttaatgcccaagaaaaccggttgactggttgtgctgtgatttcc
gagggcattactgttatagtagtggaaggtggaagcaaatccattaagaggtatgggaag
cttatgcttcggcgaatcaactgggctgaagctgtaaaagatgacaaggacggagatgaa
gatgaagacgaagagaaaccacctaacaagtgtgtgctggtttggcaaggtagcgttgcg
aaatcaagtttcaacaggttctcggttcacgagtgcatcaccgaagcagccgcgaaaaag
gtatttgctgatgcaagagttgcccattactgggaccttgcggttaatttctctgagaat
gatttttga
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