Gossypium hirsutum (upland cotton): 107892315
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Entry
107892315 CDS
T04793
Name
(RefSeq) paired amphipathic helix protein Sin3-like 2 isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ghi03036
]
107892315
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
107892315
REST complex
107892315
Heterochromatin formation proteins
Other heterochromatin formation proteins
107892315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAH
Sin3a_C
Sin3_corepress
Motif
Other DBs
NCBI-GeneID:
107892315
NCBI-ProteinID:
XP_016672848
UniProt:
A0A1U8I9C2
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All DBs
Position
D09:7504375..7514484
Genome browser
AA seq
1360 aa
AA seq
DB search
MKRIRDDIYSGSQFKRPFTSSRAESYGQNQMPGGGGGTGGGEGGGGGAGGGGSMSQKLTT
NDALTYLKEVKEMFQDQKEKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIYGFN
TFLPKGYGITLDEDEAPPKKTVEFDEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHK
DINEVYTEVASLFEDHPDLLDEFTRFLPDSQAAPMTQQVPYGRNSTQHYNERSSATPTLR
QIQMDKQRRRDRSITSNADRDLSVDRPELDDDKAVIKMQKEQRKRVEKDSRDQRIRDHDD
PEHDNNRDFNLQRFPDKKRSGRKVEGFASYDDRDTFKSMCNQGFVFCEKVKERLCNSDDY
QAFLKCLNIYSNGIIKRNDLQNLVTDLLGKYPDLMNEFNQFLERCENTDGLLAGVINKKS
LTVVGHAPKSEEKREIEAAKEKERYKYMGKSIQELDLSNCQSCTPSYRLLPDDYPIPIAS
QRSELGAQVLNDNWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSTAK
RAEDLLNSINENKINLDSPFHVEEHFTVLNLRCIERLYGDHGLDVMEILRKNPALALPVI
LTRLKQKQEEWTKCRLDFNKVWAEIYSKNHYKSLDHRSFYFKQQDSKNLSVKSLVAEIKE
LKEKNQKEDDVLMASVAGHRQPPAPHLEYEYVDVNIHEDLYKLIEYSCEEMCSTKEQLNR
VMRLWTTFLEPMLGVPPQRNGRKGIEGAGKAQNSAVNGTASSIAESDGSPGADATVNSGQ
PKAASNGDGNSSSELTNSCRNGLTNRETLAKDEHSGRVSRVDSKPEKEIKFTADKRPGIN
MVAIGIKAENNQGRSNVEGTSGPGAAASRPTSIAAGEAHESEANVDLVNSSEGVTVAKHA
LIVNGTPTDGSNGSRYHEESTGPSKVEKEEGELSPNGDFEEDNFVAYGDAGPKVVPKAKH
GVESRQQRSGNGKDLHSVDAGGENDADADDEDSENASEAGDDASGSESAGDECSHEEEEE
VERDEVYGKAESEGEAEGIADAHVGGDGTSLSFSERFLFTVKPLSKHVPPALPEDEKYNS
WVFYANDDFYVLFRLHQILYERILSAKTNLAGGEIKWKHLKDTSSSDLYARFMSALYSLL
NGSTDNTKFEDECRAIIGNQSYVLFTLDKLIYKLVKQLQAVAADEMDNKLLQLYEYEKSR
KHWKTMDSVYYENARVLLHEENIYRLKCSSSPSRLSIQLMDNVIEKPEAFAVSMEPNFSA
ILHSDFLSVFPGKKEPHGIILKRNKKNYANLDEFDATCMAMEGVELVNGLENKIACNSYK
ISYVLDTEDFFFRRRNSSRRRSRNNQARIQRFLRFLSTSQ
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaataagagatgatatatattctggttctcaatttaaacgcccatttacttct
tcaagggctgaatcctatgggcaaaaccaaatgcctggtggaggtggcggtacaggtgga
ggggaagggggaggaggaggagctggaggagggggaagtatgtcgcagaaactgactaca
aacgatgccttaacatatttaaaggaagtcaaggagatgtttcaggatcaaaaagagaag
tacgacatgttccttgaagttatgaaggatttcaaggctcaaaggactgacactgctggt
gtcattgcccgagtgaaagagttattcaaagggcataacaacttgatttatggatttaat
acctttttgccaaagggatatggaattacccttgacgaggatgaggctcctccaaaaaag
actgttgaatttgatgaagcaatcagttttgtaaacaaaataaagaaacgtttccaaaat
gatgagcatgtttataaatcatttctggatattttgaatatgtaccggaaggagcacaag
gacataaatgaggtctatactgaggttgcttctctttttgaggaccatccagatcttctt
gatgagttcacaagatttttgccagattctcaagcagcacctatgacccaacaagttcca
tatggtcgaaactcaactcagcattataacgagcgaagctctgctacacccaccttgcgg
caaatacaaatggataagcaacgtcggagggataggagtattacttccaatgctgatagg
gatctcagtgttgaccgtcctgaactggacgatgacaaagctgttatcaaaatgcaaaag
gagcagagaaagcgcgtggaaaaggacagtagggatcagagaattcgtgatcacgatgat
cctgagcatgacaacaatagggattttaacttgcagcgttttcctgacaaaaagagatcc
ggaaggaaggttgaaggatttgcttcttatgatgacagggatactttcaaaagcatgtgc
aaccaagggtttgtattctgcgagaaagttaaggagaggctatgcaactcagatgactac
caggcgttcttaaagtgccttaatatttatagcaacggaataatcaaaagaaatgatttg
caaaatttggtgactgatttacttggcaagtatccagatcttatgaatgaattcaatcag
ttcttggagcgttgcgagaatacggatgggcttcttgctggtgttattaataaaaaatct
cttacagttgtcggacatgcacccaaatcagaggaaaaacgtgaaattgaggcagctaag
gaaaaggagagatataagtatatgggaaaatcaatacaggagcttgacctttctaactgc
caaagttgtactccaagctatcggcttctgcctgatgattacccaatacctatcgcaagt
cagagatccgagctcggcgctcaagtgctgaatgataattgggtatctgtgacttcagga
agtgaggattattcttttaagcacatgcgccgaaatcaatatgaagagagcttgttcaga
tgtgaggatgataggtttgagctggatatgttgttagaatccgtgagctcaacagccaag
cgtgccgaggacttgctaaatagcattaatgaaaataaaataaatttggattctccgttc
catgttgaagaacacttcactgttctaaatttaaggtgcattgagcgtttatatggtgac
catggtcttgatgtgatggaaatattacgtaaaaatcctgctcttgcattacccgtcatt
ttaactcgcctgaagcaaaagcaagaagagtggacgaagtgccgtttagacttcaacaag
gtttgggctgaaatttattcgaaaaaccattacaaatcgcttgatcaccgcagcttctat
ttcaagcagcaggattcaaagaacttgagtgtgaaatctttagtggctgaaatcaaggag
ttgaaagagaagaaccagaaagaggacgatgttcttatggctagcgttgctggtcaccga
caaccccccgctccacaccttgaatatgaatatgtggatgtcaacattcatgaggaccta
tataaacttatagaatattcatgtgaagagatgtgctcaacgaaagaacagttaaatcga
gtcatgaggctctggaccactttcttggaaccaatgttgggtgtgcctcctcaacgtaat
ggcagaaagggcattgaaggtgctggtaaagcgcagaattctgctgtaaacggcactgca
tcaagcattgctgaaagtgatgggagccctggagctgatgctactgtaaattcagggcaa
ccaaaggctgctagtaatggagatgggaacagttcttccgaactaacaaattcttgcaga
aatgggttgacaaacagggaaactttagcgaaagatgaacactcaggtcgtgtctccaga
gttgattcgaagccagagaaagagattaaatttacagctgataaaaggcctggaattaac
atggttgctattggaatcaaagcagaaaataatcagggccgaagcaatgttgaagggaca
tcaggtcccggtgcagctgcatctagacctactagcattgctgctggtgaggctcatgaa
tctgaagctaatgttgatcttgtaaattcatcggagggtgtcactgtagcaaaacatgct
ttaatagtaaatggaacgcctacagatggctctaatggtagcagatatcacgaagaatcc
actggtccctccaaagtcgaaaaagaagaaggtgaattatcacctaatggtgattttgag
gaggataattttgttgcctatggtgatgctggtccaaaggtagtgccgaaggcaaagcat
ggtgttgaaagcagacaacagcgatctggaaatgggaaagatttgcattccgtggatgct
ggtggagaaaatgatgcggatgctgatgatgaggatagtgaaaatgcctcggaggctggt
gatgatgcatcaggcagcgagtctgcaggtgatgaatgctcccatgaagaggaggaagag
gtcgaacgtgatgaagtttatggtaaggctgagagtgaaggtgaagccgaaggaattgct
gatgcacatgtgggaggagatgggacctccttgtcattctcggaacgttttctttttaca
gtgaagcctctttcaaagcacgtaccaccagctttacctgaagatgagaaatacaattct
tgggttttttatgcaaatgacgatttctatgttcttttcagacttcatcaaatcctgtac
gaaagaatactttcggcaaaaacaaatttagccggtggtgaaataaaatggaaacattta
aaagacactagttcttcagatttatatgccagatttatgagtgcattgtacagtctgctc
aatggatcgaccgataatacgaagtttgaggatgaatgccgagctataataggaaaccag
tcatatgtgttattcacattggacaagttgatatataaattggttaaacagcttcaagct
gttgcagcggatgagatggataataagcttcttcaattgtatgaatatgaaaaatcccgg
aaacattggaagacaatggattcagtttattacgagaatgcacgtgtcctcctccatgag
gagaatatatatagactgaaatgctcttcttcgccatctcgtttgtctattcagctgatg
gacaatgtcattgaaaagcccgaagcatttgctgtttccatggaacctaatttttcagcc
attttgcacagtgactttctgtcagtctttcccggaaagaaagaaccacatggcatcata
ctaaagagaaacaagaagaactacgcaaatctagatgaatttgatgctacttgcatggcc
atggaaggcgttgaactggttaacggtttagagaacaagatagcttgcaactcatacaag
atatcttatgtattggacactgaagatttcttctttcgtagaagaaattcatcacggcgc
agatcacgcaataatcaggcaagaatacaacggttccttagatttttatccacttcacaa
taa
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