Gossypium hirsutum (upland cotton): 107893729
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Entry
107893729 CDS
T04793
Name
(RefSeq) paired amphipathic helix protein Sin3-like 2 isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ghi03036
]
107893729
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
107893729
REST complex
107893729
Heterochromatin formation proteins
Other heterochromatin formation proteins
107893729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAH
Sin3a_C
Sin3_corepress
Motif
Other DBs
NCBI-GeneID:
107893729
NCBI-ProteinID:
XP_040933427
LinkDB
All DBs
Position
A09:7696144..7711666
Genome browser
AA seq
1369 aa
AA seq
DB search
MKRIRDDIYSGSQFKRPFTSSRAESYGQNQMPGGGGGTGGGEGGGGGGGGGGGAGGGGSM
SQKLTTNDALTYLKEVKEMFQDQKEKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNN
LIYGFNTFLPKGYGITLDEDEAPPKKTVEFDEAISFVNKIKKRFQNDEHVYKSFLDILNM
YRKEHKDINEVYTEVASLFEDHPDLLDEFTRFLPDSQAAPMTQQVPYGRNSTQHYNERSS
ATPTLRQIQIDKQRRRDRSITSNADRDLSVDRPELDDDKSVIKMQKEQRKRVEKDSRDQR
IRDHDDPEHDNNRDFNLQRFPDKKRSGRKVEGFASYDDRDTFKSMCNQGFVFCEKVKERL
CNSDDYQAFLKCLNIYSNGIIKRNDLQNLVTDLLGKYPDLMNEFNQFLERCENTDGLLAG
VINKKSLTVVGHAPKSEEKREIEAAKEKERYKYMGKSIQELDLSNCQNCTPSYRLLPDDY
PIPIASQRSELGAQVLNDNWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLES
VSSTAKRAEDLLNSINENKINLDSPFHVEEHFTVLNLRCIEHLYGDHGLDVMEILRKNPA
LALPVILTRLKQKQEEWTKCRLDFNKVWAEIYSKNHYKSLDHRSFYFKQQDSKNLSVKSL
VAEIKELKEKNQKEDDVLMASVAGHRQPPSPHLEYEYVDVNIHEDLYKLIEYSCEEMCST
KEQLNRAMRLWTTFLEPMLGVPPHRNGREGTEGAGKAQSSAVNGTASSIAESDGSPGVDA
TVNSGQPKATSNGDGNSSSELTNSCRNGLTNREILAKDEHLGHVSRVDSKPEKEIKFTAD
KRPGINMVAIGIKAENNQGRSNVEGTSGPSAAASRPTSIAASEAHESEANVDLVHSSEGV
TVAKHALIVNGTPTDGSNASRYHEESAGPSKVEKEEGELSPNGDFEEDNFVAYGDAGPKV
VLKAKHGVESRQHRSGNGKALHSVDAGGENDADADDEDSENASEAGDDASGSESAGDECS
HEEHEEEEEVERDEVDGKAESEGEAEGIADAHVGGDGTSLSFPERFLFTVKPLSKHVPPA
LPEDEKYNSWVFYANDDFYVLFRLHQILYQRILSAKTNLAGGEIKWKHLKDTSSSDLYAR
FMSALYSLLNGSTDNTKFEDECRAIIGNQSYVLFTLDKLIYKLVKQLQAVAADEMDNKLL
QLYEYEKSRKHWKTMDSVYYENARVLLHEENIYRLKCSSSPSRLSIQLMDNVIEKPEAFA
VSMEPNFSAILHNDFLSVFPGKKEPHGIILKRNKKNYANLDEFDATCMAMEGVELVNGLE
NKIACNSYKISYVLDTEDFFFRRRNSSRRRSHNNQARIQRFLRFLSTSQ
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaataagagatgatatatattctggttctcaatttaaacgtccgtttacttct
tcaagggctgaatcctatgggcaaaaccaaatgcctggtggaggtggcggcacaggtgga
ggggaagggggaggaggaggaggagggggaggtggaggagctggaggagggggaagtatg
tcgcagaaactgactacaaacgatgccttaacatatttaaaggaagtcaaggagatgttt
caggatcaaaaagagaagtacgacatgttccttgaagtcatgaaggatttcaaggctcaa
aggactgacactgctggtgtcattgcccgagtgaaagagttattcaaagggcataacaac
ttgatttatggatttaatacctttttgccaaagggatatggaattacccttgacgaggat
gaggctcctccaaaaaagactgttgaatttgatgaagcaatcagttttgtaaacaaaata
aagaaacgtttccaaaatgatgagcatgtttataaatcatttctggacattttgaatatg
taccggaaggagcacaaggacataaatgaggtctatactgaggttgcttctctttttgag
gaccatccagatcttcttgatgagttcacaagatttttgccagattctcaagcagcacct
atgacccaacaagttccttatggtcgaaactcaactcagcattataatgagcgaagctct
gctacacccaccttgcggcaaatacaaattgataagcaacgtcggagggataggagtatt
acttccaatgctgatagggatctcagtgttgaccgtcctgaactggacgatgacaaatct
gttatcaaaatgcaaaaggagcagagaaagcgcgtggaaaaggacagtagggatcagaga
attcgtgatcacgatgatcctgagcatgacaacaatagggattttaacttgcagcgtttt
cctgacaaaaagagatccggaagaaaggttgaaggatttgcttcttatgatgacagggat
actttcaaaagcatgtgcaaccaagggtttgtattctgcgagaaagttaaggagaggcta
tgcaactcagatgactaccaggcgttcttaaagtgccttaatatttatagcaacggaata
atcaaaagaaatgatttgcaaaatttggtgactgatttacttggcaagtatccagatctt
atgaatgaattcaatcagttcttggagcgttgcgagaatacggatgggcttcttgctggt
gttattaataaaaaatctcttacagttgttggacatgcacccaagtcagaggaaaaacgc
gaaattgaggcagctaaggaaaaggagagatataagtatatgggaaaatcaatacaggag
cttgacctttctaactgccaaaattgtactccaagctatcggcttctgcctgatgattac
ccaatacctatcgcaagtcagagatccgagctcggcgctcaagtgctgaatgataattgg
gtatctgtgacttcaggaagtgaggattattcttttaagcacatgcgccgaaatcaatat
gaagagagcttgttcagatgtgaggatgataggtttgagctggatatgttgttagaatcc
gtgagctcaacagccaagcgtgccgaggacttgctaaatagcattaatgaaaataaaatc
aatttggattctccgttccatgttgaagaacacttcactgttctaaatttaaggtgcatt
gagcatttatatggtgaccatggtcttgatgtgatggaaatattacgtaaaaatcctgct
cttgcattacccgtcattttaactcgcctgaagcaaaagcaagaagagtggacaaagtgc
cgtttagacttcaacaaggtttgggctgaaatttattcaaaaaaccattacaaatcgctt
gatcaccgcagcttctatttcaagcagcaggattcaaagaacttgagtgtgaaatcttta
gtggctgaaatcaaggagttgaaagagaaaaaccagaaagaggacgatgttcttatggct
agcgttgctggtcaccgacaacccccctctccacaccttgaatatgaatatgtggatgtc
aacattcatgaggatctatataaacttatagaatattcatgtgaagagatgtgctcaacg
aaagaacagttaaatcgagccatgaggctctggaccactttcttggaaccaatgttgggt
gtgcctcctcatcgtaatggcagagagggcacggaaggtgccggtaaagctcagagttct
gctgtaaatggcactgcatcaagcattgctgaaagtgatgggagccctggagttgatgct
actgtaaattcagggcaaccaaaggctactagtaatggagatgggaacagttcatccgaa
ctaacaaattcttgcagaaatgggttgacaaacagggaaattttagcaaaagatgaacac
ttaggtcatgtctccagagttgattcgaagccagagaaagagattaaatttacagctgat
aaaaggcctggaattaacatggttgctattggaatcaaagcagaaaataatcagggcaga
agcaatgttgaagggacatcaggtcccagtgcagctgcatctagacctactagcattgct
gctagtgaggctcatgaatctgaagctaatgttgatcttgtacattcatcggagggtgtc
actgtagcaaaacatgctttaatagtaaatggaacgcctacagatggctctaatgctagc
agatatcacgaagaatctgctggtccctccaaagtcgaaaaagaagaaggtgaattatca
cctaatggtgattttgaggaggataattttgttgcctacggtgatgctggtccaaaggta
gtgctgaaggcaaagcatggtgttgaaagcagacaacaccgatctggaaatgggaaagct
ttgcattccgtggatgctggtggagaaaatgatgcggatgctgatgatgaggatagtgaa
aatgcctcggaggctggtgatgatgcatcgggcagtgagtctgcaggtgatgaatgctcc
catgaagaacatgaagaggaggaagaggtcgaacgtgatgaagttgatggtaaggctgag
agtgaaggtgaagccgaaggaattgctgatgcacatgtgggaggagatgggacctccttg
tcattcccggaacgttttctttttacagtgaagcctctttcaaagcacgtaccaccagct
ttacctgaagatgagaaatacaattcttgggttttttatgcaaatgacgatttctatgtt
cttttcagacttcatcaaatcctataccaaagaatactttctgcaaaaacaaatttagcc
ggtggtgaaataaaatggaaacatttgaaagacactagttcttcagatttatatgccaga
tttatgagtgcattgtacagtctgctcaatggatcaaccgataatacaaagtttgaggat
gaatgccgagctataataggaaaccagtcatatgtgttattcacattggacaagttgata
tataaattggttaaacagcttcaagctgttgcagcggatgagatggataataagcttctt
caattgtatgaatatgaaaaatccaggaaacattggaagacaatggattcagtttattac
gagaatgcacgtgtccttctccatgaggagaatatatatagactgaaatgctcatcttcg
ccatctcgtttgtctattcagctgatggacaatgttattgaaaagcccgaagcatttgct
gtttccatggaacctaatttttcagccattttgcacaatgactttctgtcagtctttccc
ggaaagaaggaaccacatggcatcatactaaagagaaacaagaagaactacgcaaatcta
gatgaatttgatgctacttgcatggccatggaaggtgttgaactggttaacggtttagag
aacaagatagcttgcaactcatacaagatatcttatgtattggacactgaagatttcttc
tttcgtagaagaaattcatcacggcgcagatcacacaataatcaggcaagaatacaacgg
ttccttagatttttatccacttcacaataa
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