Gossypium hirsutum (upland cotton): 107894746
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Entry
107894746 CDS
T04793
Name
(RefSeq) histone deacetylase 9 isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03082
ATP-dependent chromatin remodeling
ghi03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107894746
03083 Polycomb repressive complex
107894746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ghi03036
]
107894746
Enzymes [BR:
ghi01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
107894746
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
107894746
HDAC complexes
Sin3A-HDAC complex
107894746
BRAF-HDAC complex
107894746
REST complex
107894746
SHIP complex
107894746
MiDAC complex
107894746
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
107894746
Heterochromatin formation proteins
Other heterochromatin formation proteins
107894746
Chromatin remodeling factors
NuRD complex
107894746
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
107894746
NCBI-ProteinID:
XP_040932367
LinkDB
All DBs
Position
A09:65266047..65271084
Genome browser
AA seq
429 aa
AA seq
DB search
MRSKEKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLAYDLHKKMEIYRPHKAYPVEL
AQFHSADYVEFLHRITPDTQHLFSNELARYNLGEDCPVFENLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKFGDMFFPGTGDVKDIGEREGKYYAINVPLKDGIDDTSFTRLFKI
IISKVVEMYQPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVKIVKKFNLPLLVTGGGGY
TKENVARCWTVETGVLLDTELPNEIPENEYIKYFAPDCLLNIPNGHIENLNSKSYLSTIK
MQVLENLRSIQHAPGVQMQEVPPDFYIPDFDEDEHNPDERMDQHTQDKQIQRDDEYYDGD
NDNDHNMDM
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgcgttccaaggaaaaaatatcctacttttacgacggagatgtagggagcgtatacttt
ggacctaatcatccaatgaaacctcaccggctttgtatgactcaccatttggtccttgcc
tatgacctccataaaaagatggaaatttatcgtccccacaaggcttaccccgttgaactc
gctcagttccattcagctgattatgtcgagtttttgcatcgaattacgccagatacgcag
catttgttctcgaatgaattggccagatacaatcttggagaagactgccctgtgtttgaa
aacttgtttgaattttgtcaaatttatgctggtgggacaatagatgctgcaagaagatta
aacaatcagttatgtgatattgcaataaattgggctggtggtttacatcatgccaagaag
tgtgaggcatctggcttttgttacatcaatgacttggttttgggaatcttggagcttctg
aagtatcatgcccgtgttttgtatattgatatcgatgtacatcatggtgatggggttgaa
gaagccttttatttcactgacagggtgatgactgttagttttcacaagtttggcgatatg
ttctttcctggaactggtgatgtgaaggacataggagaaagagaaggaaagtattacgcc
ataaatgtcccactcaaagatggaattgatgacactagcttcactagattgtttaagata
attatttccaaggttgttgaaatgtatcaaccaggtgcaatagttcttcaatgtggagca
gattctcttgctggggatcgcttgggctgtttcaatctctcaattgatggacatgctgaa
tgtgttaaaattgtgaagaaattcaacctacctttactggttaccggaggcggaggatat
actaaagaaaatgttgcacgttgctggactgttgaaacaggagttcttttagatacagaa
cttcctaatgaaatcccagaaaatgagtatatcaaatattttgcaccagattgcttgttg
aatattccaaatgggcacatagagaatttgaatagcaagtcatatcttagtacgatcaag
atgcaagtgctggaaaaccttcgtagcatccaacatgctccaggtgtacagatgcaggag
gttccacctgatttttatattcctgattttgatgaagatgagcataatcctgatgagcgc
atggatcagcacacccaagacaagcaaatccagcgtgatgatgaatattacgatggtgac
aacgataatgatcataacatggacatgtga
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integrated database retrieval system