KEGG   Gossypium hirsutum (upland cotton): 107894746
Entry
107894746         CDS       T04793                                 
Name
(RefSeq) histone deacetylase 9 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03082  ATP-dependent chromatin remodeling
ghi03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    107894746
   03083 Polycomb repressive complex
    107894746
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ghi03036]
    107894746
Enzymes [BR:ghi01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     107894746
Chromosome and associated proteins [BR:ghi03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     107894746
   HDAC complexes
    Sin3A-HDAC complex
     107894746
    BRAF-HDAC complex
     107894746
    REST complex
     107894746
    SHIP complex
     107894746
    MiDAC complex
     107894746
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     107894746
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    107894746
  Chromatin remodeling factors
   NuRD complex
    107894746
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 107894746
NCBI-ProteinID: XP_040932367
LinkDB
Position
A09:65266047..65271084
AA seq 429 aa
MRSKEKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLAYDLHKKMEIYRPHKAYPVEL
AQFHSADYVEFLHRITPDTQHLFSNELARYNLGEDCPVFENLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKFGDMFFPGTGDVKDIGEREGKYYAINVPLKDGIDDTSFTRLFKI
IISKVVEMYQPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVKIVKKFNLPLLVTGGGGY
TKENVARCWTVETGVLLDTELPNEIPENEYIKYFAPDCLLNIPNGHIENLNSKSYLSTIK
MQVLENLRSIQHAPGVQMQEVPPDFYIPDFDEDEHNPDERMDQHTQDKQIQRDDEYYDGD
NDNDHNMDM
NT seq 1290 nt   +upstreamnt  +downstreamnt
atgcgttccaaggaaaaaatatcctacttttacgacggagatgtagggagcgtatacttt
ggacctaatcatccaatgaaacctcaccggctttgtatgactcaccatttggtccttgcc
tatgacctccataaaaagatggaaatttatcgtccccacaaggcttaccccgttgaactc
gctcagttccattcagctgattatgtcgagtttttgcatcgaattacgccagatacgcag
catttgttctcgaatgaattggccagatacaatcttggagaagactgccctgtgtttgaa
aacttgtttgaattttgtcaaatttatgctggtgggacaatagatgctgcaagaagatta
aacaatcagttatgtgatattgcaataaattgggctggtggtttacatcatgccaagaag
tgtgaggcatctggcttttgttacatcaatgacttggttttgggaatcttggagcttctg
aagtatcatgcccgtgttttgtatattgatatcgatgtacatcatggtgatggggttgaa
gaagccttttatttcactgacagggtgatgactgttagttttcacaagtttggcgatatg
ttctttcctggaactggtgatgtgaaggacataggagaaagagaaggaaagtattacgcc
ataaatgtcccactcaaagatggaattgatgacactagcttcactagattgtttaagata
attatttccaaggttgttgaaatgtatcaaccaggtgcaatagttcttcaatgtggagca
gattctcttgctggggatcgcttgggctgtttcaatctctcaattgatggacatgctgaa
tgtgttaaaattgtgaagaaattcaacctacctttactggttaccggaggcggaggatat
actaaagaaaatgttgcacgttgctggactgttgaaacaggagttcttttagatacagaa
cttcctaatgaaatcccagaaaatgagtatatcaaatattttgcaccagattgcttgttg
aatattccaaatgggcacatagagaatttgaatagcaagtcatatcttagtacgatcaag
atgcaagtgctggaaaaccttcgtagcatccaacatgctccaggtgtacagatgcaggag
gttccacctgatttttatattcctgattttgatgaagatgagcataatcctgatgagcgc
atggatcagcacacccaagacaagcaaatccagcgtgatgatgaatattacgatggtgac
aacgataatgatcataacatggacatgtga

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