Gossypium hirsutum (upland cotton): 107895764
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Entry
107895764 CDS
T04793
Name
(RefSeq) chromatin structure-remodeling complex protein SYD-like isoform X1
Organism
ghi
Gossypium hirsutum (upland cotton)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
ResIII
DEAD
DEAD_2
Motif
Other DBs
NCBI-GeneID:
107895764
NCBI-ProteinID:
XP_040934924
LinkDB
All DBs
Position
A10:22670438..22688287
Genome browser
AA seq
3361 aa
AA seq
DB search
MASSSHNVEFEAAKFLHKLIQDSKDEPSKLATKLYVILQHMKSSGKEHSMPFQVISRAME
TVINRHGLDLEALKSSRLPGSQIVDSTSGQYVGSSQAVSVPKDSKAGATQNEIPKFDPFS
FSRPPVGPSMAGHEYHQAAATHRGSQSFDHGSPSSLDTRSANSQSQEKQMNQNDSKKGAT
KRKRGDSSSPLEPNFDESLNAVIDSRKGKMNKAETSAPANYNMVPSSGQMEHFPSSPGNM
RSMHRGRQDGQNVTENLVDSTNISNMMLRGPSSKYPEELEVSSAQNVPRQQQGGLPGAHE
IFSSKGKAGLPFDRSQLHRFSPNVSGNITAEIASQQLMHASLMPGSFGKVQGGLSAPSNY
HAGELAYSGLGQFSGSENQKHGLSKSSVASPDGSSSTLSAGKVLEHDGGSSNMLGDVNKI
AQAGRQNSASEMTMLRAMAPRDTGMSPVSQSAALSSMPFKEHQLKQLRAQCLVFLAFRNG
LMPKKLHLEIALGNIFPREVGNTDGIRKELNDHRGKAQTSSDPSSISEVAMSFGRMNNVP
PALTSIGRFPEADSLSKEAEKLKVEETNGPTSDLLAIVEERKHILATRKAEADLQSHEAV
EPQAYLPTMSRQPDSATTKDGFTVPNNLDGMENGHLQVAKADLASSMMGANKQVNPEMMG
WSGIGFHNEVSRASLPAAAIQHDLMLERKDTAPLFQSLEQDEDKSVSTDSLPSPKYTMLE
KWIMDQQKRKFLAEQKWVAKQQETRQRIITCFTKLKGNVSSSEDISGKTKSVIELKKLQL
LELQCRLRSDFLNNFFKPITNDMERLKSYKKHRHGRRIKQLEKYEQRMKEERQKRIRERQ
KEFFSEIEVHKERLDDVFKVRRERWKGINRYVKEFHKRKERIHREKIDRIQREKINLLKI
NDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLRDAKAMASCFENNMDEMRTTSFDE
NDTAIENEDEAKHYMESNEKYYLMAHSIKESISEQPRFLKGGKLREYQMNGLRWLVSLYN
NHLNGILADEMGLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPEIH
KIVYAGPPEERRRLFKERIVHQKFNILLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIK
NASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFE
SNGDNSADEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQ
KLLMKRVEENLGAIGNSKARSVHNSVMELRNICNHPYLSQLHVEEVDNLIPQHYLPPIIR
LCGKLEMLDRILPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGNDRGA
LIEKFNQQGSTFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKK
DVLVLRFETVQTVEEQVRAAAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKE
EAAPVLHDDALNDMLARSESEIDVFESVDKQRQEEETAKWKKLVFGLGMDGSKPLPPLPS
RLVTDDDLKDFYEAMKLYDIQKSGAQPNVGVKRKGESLGALDTQHYGRGKRAREVRSYEE
QWTEEEFEKMCQVDSPGSSGLREEAVERNLAKNALAGTVNSTEPHALAPAPAPAPAPTLP
LPQPVQVELAHQPQQQSKDVTPPSKRGRGRPRRATAEKSPNTPVFPAPYGTGKLDVGLQK
AADDSSSAFPAPDSHNSTGVSLNLPPSAPSVSAIPDDSTPPGFSPPVESKGQGRRAQSGG
QAPSRRGKKQEPALGPAVEALVGPVPETNDQSQIKSVIPPDSKAVATSGTVPGVLSAPMA
VGTNPVPISAGMDCTTGTNHPSDVGFSLNSQTLNTSSGAPISQSTLPCPTVPVQVKGQGR
KAQIGAGAPRRRGKKQAKISAAPLDASVGQDSKLNPQAQDKSSVALPNKVIVMGGNQVND
ACDPTKVTQEHGLVTNAPATLTGQDKHSSEHDNLPQSKQPEVSQEVHNSTALILGPALGK
IQKADMHEKASMISGVSSECSSQKATSSEVCGNLGGAVAVAPCQTSVEVVKNQNSEDKVQ
STFSIGKPVSLVSVATTDSLHASTPLAGANKTIPSSSEKIAPSSEPYPTCVLAASEPHSV
PACPAESVQSRRPGRKATHRAEAPRRRGRKPATPDASSGQDLKVNSQPLNISKNLLVNKT
TAGNSNQDSGPHELVNVTQVHASEIHSPGASVGHDLKRKVTGAIPAFSRIPTPDVNDVAR
VMKEIFSETCSSKTKIGEPAGSEGKNTPTASKAFEEVVKNQSLDGKPAVSTPAPVKTAPA
CDVPKEKSKKHSETEADTKELEDNASLAIKVPVLERANSLKPECKTHSGSDNVAKSIQIS
NENLVTDNNVQVNSTHPHSADDVKDAAQGAPAPTGVQTGSRNGLNDIPIKTSVSDQSVVT
LSDLSFDKSVVPSMVIRTESIVVKGPETIENSNNHQASSVVEGMTPTHEAATLDDAPVEN
RDVEGQSGGNDSKNPIPEPVLSSTTESADIELVPQDGGALLQSPVVRDKEGDVAEIRHMV
VDPCETKLSSLKDFTAESANRDSATEVDGGKQLSAGVQTTKIDNVEVRDPEVKPSETQSS
EPAKTPFEIAVPVSDSFQDKNSERSRMDAYAKESAEKSPLVVMTSMTESVCRVIQCQPAT
GPENFSVPRQLSREISMTQSSMEVDCKDHHSAAEIDCESTIHSTKASDACNGSRVVPPTS
VVMEPKVASSEDKEKPSLESSYSASLDVSSSRAHVASESSGVTAVVPLSSDHSVARSLPD
QIAIPSESDMEPSAIESESSFNVESAEAALNATKLLDVTDHPEESLPITAFPDKSGTVDR
PVMVEKFSKCKLEPSSDKLGSVEAPAMVENNSELEAVPPLKSHPEPSVLEVDNLQSAAMS
TKPDVDDAPLVTSNISPSPVCSVMVELPAITENELGKETKPSSGSENITPSPVHLFAFDS
TDRALTPTDDELQQSSAAERVDAKSVDVSNEVEPTAQPASSQDFAAEASNEDFAPENHGE
AKVSPGIKSVADGHVERDVDPLELEASVDEDIAAVPSSMELVPGDQSKVHVQAGVAGCEG
DDGIQGRDMEVDPLETLATSSEVAAKDSLTGEHVQNDQSQELLGTEKTQADHVEASIIEP
NSSEAQTSVPQSGITDDEEQLAQRPEVDLVEACNEESNPAEGPSSAQAISDESTRSENDP
GLTRASSLQSEKSEVHQVETCNMESNPTGPSSSQVISNESNNPGLTQNKLQSEDPAEASQ
SPKTETVEVSDMDIHLKETKDLPPELEDDAKASVQPNVVSDMEIDTDQTNIPSQSTDETI
A
NT seq
10086 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttcttcacataatgtggagttcgaggcggcaaagtttctgcataagctcata
caagattctaaagatgagccttcaaagctggcaacaaaactttacgtgatattgcaacac
atgaaatctagtgggaaagaacattcaatgccgtttcaagtaatatcaagggcaatggag
actgttatcaatcgacatggtcttgaccttgaggctttgaaatcatcacggcttcctggg
tcacaaatagtggattctacatctgggcaatatgttggatcctctcaggctgtttcagtt
ccaaaagattctaaagcaggagcaacccaaaacgagatacctaaatttgatccattttca
ttcagcaggccgcctgttggcccaagcatggctggacatgagtatcatcaagcagctgca
acgcataggggtagtcagtcttttgatcatggaagcccctcaagtttggacaccaggtct
gctaactcacaatcacaagagaaacaaatgaatcaaaatgatagcaagaagggtgcaact
aaaagaaagaggggtgattcatcatcaccattggaaccaaattttgatgaatctctcaat
gctgtcattgattctaggaaagggaagatgaataaggctgaaacatctgcccctgctaac
tacaacatggtcccaagtagtggtcaaatggagcattttccatcctcgcctggaaatatg
agatcaatgcatagaggtagacaggatggtcaaaatgtaacagaaaacctggtagattcg
acaaacattagcaatatgatgttacgcggtcctagttcaaagtatcctgaagagttggaa
gtttcttctgctcaaaatgttccaagacagcagcaaggtggactacctggtgcacatgaa
attttttcttccaagggtaaggctgggttaccctttgacagatctcaacttcacaggttt
tctccaaatgtttctggcaacataacagcagaaattgcatctcagcagttgatgcatgca
tctcttatgccaggttcttttgggaaggttcaaggaggattgtctgccccatctaactat
catgcaggagaattagcatattcaggtttaggccaatttagtggttctgagaatcagaag
catgggttatccaaaagttctgtagcaagtcctgatgggtcgtcttcaacactttctgct
ggaaaagttttagaacatgatggaggcagttcaaatatgttaggagatgtaaataagata
gctcaggctggcagacaaaatagtgcctcagaaatgactatgcttagggccatggctcca
agagacacgggaatgtctcctgtctctcaatctgccgcattatctagcatgcccttcaag
gaacaccagttgaaacagcttagagcccagtgccttgtttttctagctttcagaaacggt
ttgatgccaaagaagctgcatcttgaaattgcgcttggaaacatatttcctagggaagtt
ggtaatacagatggcattcgcaaagagttgaatgaccatagaggcaaagcacagacttct
agtgacccaagtagcatatctgaagttgcaatgtcatttggaaggatgaataatgtacct
ccagctttgacatctatcggaagatttccagaggctgattccttgtcaaaagaagcagaa
aaattaaaagtggaggagactaatggcccaacttctgatcttttagcaattgtggaggaa
aggaaacatattctagctacaaggaaggcagaggctgatcttcagagccacgaggcagtg
gaaccacaggcatacttacctacaatgtcacgacagcctgactctgccaccacaaaggat
ggttttactgttcctaacaatttggatggcatggagaatggccatttgcaagttgcaaag
gctgatctagcctcatctatgatgggtgctaataaacaggtgaaccctgaaatgatgggc
tggtctggaattggctttcataatgaggtttccagggcatctttgccagctgctgctatt
cagcatgatttgatgctagaaagaaaagatactgctcctctgtttcaaagtctggagcaa
gatgaggataaatctgtgtcaactgattcattgccatctccaaagtatacaatgttggag
aaatggattatggatcagcagaaacggaagttcttagctgagcagaagtgggttgcaaaa
cagcaagaaacaaggcaaagaattattacctgtttcacgaaattaaagggaaatgtgagc
tcatctgaagatatatctggaaaaaccaaaagtgtaatagagttgaagaaactccaatta
ttggagcttcaatgtcgcctaaggagtgattttctgaacaacttttttaaacccattaca
aatgatatggaacgcctgaaatcatacaagaaacatagacatggtagaaggataaaacaa
ctcgagaaatatgagcagagaatgaaagaagagcgacaaaagagaatacgtgagaggcag
aaggagtttttcagtgagatagaagttcacaaggagaggctggatgatgtgtttaaagtt
agaagggaacgttggaaaggtatcaatagatatgtgaaggagttccataagagaaaggag
cgtatacatcgtgagaagattgacaggattcagcgtgagaagattaacttactcaaaatc
aatgatgtagagggttatttgcgaatggttcaggatgctaaatcagatcgtgttaagcaa
ctattgaaagaaactgagaaatatcttcaaaagcttggatccaagttacgggatgcgaag
gctatggcaagctgctttgagaataatatggatgagatgcgaactacaagttttgatgaa
aatgacactgctattgagaatgaagatgaggcaaagcattacatggaaagcaatgaaaag
tactacctgatggctcatagcataaaagaaagcatcagtgagcaaccaagatttcttaag
ggtgggaaattaagagagtatcagatgaatggccttaggtggctggtttcactctacaat
aatcatctgaatggcattcttgctgatgaaatgggccttgggaaaactgttcaggttatt
tctcttatttgttacctaatggaaaccaaaaatgatagaggaccatttttagtggttgta
ccatcttcagttctgcctggatgggaatcggaaatcaatttctgggctcctgaaatacac
aaaattgtttatgctggacctccggaggagaggcgtagattattcaaggagaggattgta
caccagaaatttaacattctcttgacaacgtatgagtatctaatgaacaagcatgataga
ccaaagttgagcaaaattcattggcactatattataattgatgaaggtcaccggataaaa
aatgcttcttgcaagttgaatgcagacttaaagcactatcagagctctcatagattgctg
ttgactggaactccactacagaacaatcttgaggagttgtgggcattgctcaatttctta
ttgcctaatatatttaactcatcagaggatttttctcagtggttcaacaagccatttgag
agtaacggggataattctgctgatgaagccctactatctgaggaggaaaatttgttgatc
ataaaccgtctacaccaagttcttcgtccttttgtacttcgaaggctgaagcataaggtt
gaaaatgaacttcctgagaagattgagaggcttgtaagatgcgaagcttctgcttatcaa
aaacttttgatgaagagggttgaagaaaatcttggtgcaatcggaaattcaaaggctcga
tccgtacacaactctgttatggagcttcgtaatatatgcaatcatccatatctcagccag
cttcatgtggaggaggttgataatttaataccacagcattatttgccgccaattattagg
ctttgtggcaagcttgagatgttagatcgaatactccccaagttgaaggcaactgatcat
cgggttctcttcttttccaccatgacgaggctactagatgttatggaagactatctcacc
tttaaacagtatcgttacctacggttggatgggcatacatcagggaatgatcgtggtgca
cttattgaaaagtttaatcaacaaggttccacttttttcatatttttgctcagtattcga
gctggtggtgttggagtcaatcttcaagctgctgataccgtgataatattcgatactgac
tggaatcctcaggttgacctgcaagcgcaagcaagagctcataggattggccagaagaag
gatgtacttgttttaagatttgaaacagttcaaacagttgaagaacaagtcagagctgct
gctgaacacaaattaggagttgctaatcagagtatcactgccggtttctttgacaataat
acaagtgctgaggaccgtagggagtacttagagtccctcctgcgagagtgcaagaaagag
gaagctgccccagtgttacatgatgatgctttaaatgacatgttggcccgcagtgaatct
gagattgatgtctttgaatcagttgataaacaaaggcaggaagaagagacggcaaagtgg
aagaagttggtatttggattagggatggatggctccaagcctttaccccctttaccatct
cgtcttgttacagatgatgacttaaaagatttttatgaagcaatgaaactgtatgatata
caaaagtctggggcacagcctaatgttggggtaaagcggaagggtgaatctcttggtgct
cttgatactcagcactatgggaggggcaaacgagctagggaggtgcgttcatatgaagag
caatggacagaagaggagtttgaaaaaatgtgtcaagttgactcacctggatcctcagga
ttaagggaagaagctgttgagaggaacctggcaaaaaatgctttggcagggactgttaat
agcactgaacctcatgctctggctcctgccccagcccctgctccagctccgactctgcca
ctaccacaaccagttcaggtggagcttgcacatcagccacagcagcagagcaaagatgta
acaccaccatctaaaaggggccgtggaaggccaagaagagcaactgctgagaaatctccc
aatacaccagtgtttccagcaccttatggaaccggtaaattggatgttgggttacagaaa
gcagcagatgatagctcatcagcatttcctgctccagattctcacaatagtaccggagtt
tctctgaacttgccgccaagtgcaccctctgtttctgccattcctgatgactctacccca
cctggattctctccaccagtagaatcaaaaggacaaggtcgaagggctcaaagtggagga
caggcacctagtcgaaggggaaagaaacaagagccagcattgggccctgccgttgaggct
ttagttggtcctgttccagaaacaaatgatcaatctcagattaaatcagtcattccacca
gatagtaaagctgttgctactagtggaactgttcctggtgtattaagtgctcccatggcc
gtgggtaccaatcctgtgcctatttctgctggtatggattgtactacgggaaccaatcat
ccatctgatgtggggtttagtttgaactctcagacacttaatacttcctcaggtgcccca
atttctcaatcaactcttccttgccctactgtacctgtccaagtgaaaggccaaggccgt
aaggctcagattggggcaggagcacctcggcgtaggggaaagaaacaggcaaaaatatca
gctgctcctctagatgcttctgttggccaggattcaaaattgaatcctcaagctcaggat
aagtcttcagtggcattaccaaataaagtcattgtgatgggaggcaatcaagtaaatgat
gcttgtgatccaacaaaagttacccaagagcatggactggtaactaatgcacctgctacc
ctaactggtcaggataaacattcttctgaacatgataatttaccccaaagcaagcagcca
gaagtctcacaggaagtgcacaatagtacagccttaatcctaggccctgctctgggaaaa
attcaaaaagctgatatgcatgagaaggcttccatgatttcaggggtttcatctgaatgc
agctctcagaaagctacatctagcgaagtatgtggtaacctaggtggtgcagtggctgtg
gctccttgtcagacctcagttgaagtggtaaagaatcaaaattctgaagataaagtgcag
tcaactttttcaattgggaaacctgtatctttagtttctgttgctacaacagattctttg
catgcatcaactcccttagcaggtgccaataaaaccataccaagttctagtgaaaagatt
gctcccagctctgagccttatccaacttgtgttcttgctgcttctgaacctcattctgtc
cctgcttgtcctgctgaatctgttcaaagtagaaggccaggtcgtaaggccacacacagg
gcagaagcacctaggcgcagaggaaggaaacctgcaactcctgatgcttcatctggccag
gacttgaaagtaaattctcagcccctgaatatatcaaagaatttattggtcaataaaact
actgcagggaatagcaatcaagattctggccctcatgaactggtcaatgtcactcaggta
catgcatcagaaatccattctcctggtgcttcagttggtcatgatttgaagagaaaagtg
actggtgcaattccagcatttagtcgaattccgactcctgatgtgaatgatgttgcccga
gtgatgaaggagattttctctgaaacctgctcatcaaaaactaaaattggtgaacctgct
gggagtgagggaaaaaatactcctactgcaagtaaggcatttgaggaggtagtgaagaac
caaagtttagatggtaaaccagctgtcagcacaccagctcccgtaaaaactgctccagct
tgtgatgttccaaaagaaaaaagcaaaaagcattccgaaactgaagctgatacaaaagaa
ctggaggacaatgcatctcttgcgatcaaggtccctgttcttgagagagctaattctttg
aagcctgaatgcaagacccacagtggctcagacaacgttgcaaaatcaatacagatttca
aatgaaaatttagttacagataataatgtgcaggttaatagcacacatcctcatagtgct
gacgatgtgaaagatgcagctcaaggagctcctgctcctactggtgttcaaactggttct
agaaatggtcttaatgatattcctatcaaaacatctgtttcagatcaatctgttgttact
ttgagtgatctttcctttgacaagtcagtcgtgccttctatggttataaggactgaatcc
attgttgttaaaggtccagaaactatagaaaactcaaacaatcatcaagctagttctgtg
gttgaaggtatgactccaacccatgaggccgctactttggatgatgctcctgttgaaaac
cgagatgtggagggtcaatctgggggaaatgactctaagaaccctatacctgagccagtt
ctttctagtacaactgaatctgctgatatagagcttgttccacaagatggtggagccttg
ctacaatccccggtggttcgagataaggagggtgatgttgctgagattcgccatatggta
gtagatccctgtgagaccaagttgtcttctttgaaagattttactgctgaatccgccaac
agggattctgctacagaagttgatggtgggaagcaattgtctgcgggagttcaaactacc
aagattgacaatgttgaagttcgtgatccagaagttaaaccctcagaaacacaatcatct
gagccagctaaaacgccttttgaaatagcagttcctgtttctgatagttttcaggacaag
aacagtgaacggtccaggatggatgcttatgctaaagagtctgcagagaaatctcctctt
gtggttatgacttctatgacagaaagtgtttgtcgagtcattcagtgccagcctgctaca
gggcctgagaacttttcagttcctagacagctttcccgtgaaatttcaatgactcagagc
agcatggaggttgattgtaaagatcatcatagtgctgctgaaatagattgtgaatccacc
attcactctacaaaagccagtgatgcttgtaatggttctagagtggtcccacctacttct
gttgtgatggagcctaaagtggccagctctgaagacaaagaaaaaccttccttggaatct
tcgtattcagcttcgcttgatgttagttcttcgagggctcatgttgctagtgagtcttct
ggagtgactgcagtagttcccttgagttcagaccattcagtagctagatctcttcctgat
cagattgcaattccatctgaaagcgacatggaaccttctgctatagagtcagaatcttct
tttaatgtcgaaagtgctgaagctgcactgaatgcaactaaattgcttgatgttaccgac
catccagaagagtctttacctattactgcctttccagataagtcaggtacagtggacaga
cctgttatggttgagaaattttccaaatgcaaattagaaccttcttcagataagttgggt
tcagtggaggcacccgctatggttgagaataattctgaacttgaagcagtgcctcctttg
aaatcacatccagaaccctctgtcctcgaggttgacaaccttcaaagtgccgcaatgtcc
acaaaacctgatgttgatgatgctcctcttgtgacttcaaatatttctccaagtccagtt
tgttcagtcatggtggagcttcctgctattactgagaatgaactgggaaaagaaacaaaa
ccatctagcgggagtgaaaatattactccaagtcctgtccacttgtttgcttttgattct
actgatagggcacttactccaacagatgatgagttgcaacagtcatcagctgctgaaagg
gtagatgctaagtctgttgatgttagcaatgaagtagagcccactgcacaaccagcatct
tctcaggattttgctgctgaagcttctaatgaagattttgcacctgagaaccatggtgag
gcgaaggtgtctccaggaattaagagtgtagcggatggtcatgttgaaagggatgttgac
cctctggagctggaagcatccgtggacgaagatattgctgctgtgccatccagcatggag
cttgttcccggagatcagagtaaagtgcatgttcaagcaggagttgcaggttgcgaaggt
gatgatggtattcagggcagagacatggaagttgatcccttggaaacacttgcaacttca
tcagaagttgccgccaaggactcccttacgggagaacatgttcaaaatgatcagtctcaa
gagctcctaggaactgaaaagacacaggctgaccatgttgaggcttctattattgaacca
aactcctcagaagctcagacatctgtaccgcaatctggcattactgacgatgaagagcag
cttgctcagaggcctgaggttgaccttgttgaggcctgcaatgaggaatctaatcctgca
gaaggaccatcctcagcacaagccatctctgatgaatctaccaggtctgagaatgatcca
gggcttacacgtgcatcttcactgcaatctgaaaagtctgaggttcatcaggttgagacc
tgcaatatggaatcgaatcccacaggaccatcctcatcacaagtcatctctaatgaatct
aacaacccagggcttacacaaaacaagctccaatccgaagatcccgccgaggcttctcag
tcacccaagactgaaactgttgaggtctctgatatggacatacaccttaaagaaacaaaa
gatcttccacctgaactggaagatgatgctaaagcttctgtgcagcctaatgttgtctcg
gatatggaaatagacaccgaccaaaccaatattccatcacagagcacggatgaaactatt
gcatag
DBGET
integrated database retrieval system
