Gossypium hirsutum (upland cotton): 107904760
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Entry
107904760 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: protein argonaute 1
KO
K11593
eukaryotic translation initiation factor 2C
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107904760
03036 Chromosome and associated proteins [BR:
ghi03036
]
107904760
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
107904760
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107904760
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
107904760
microRNA pathway
RISC loading complex
107904760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
Gly-rich_Ago1
ArgoL2
ArgoMid
Motif
Other DBs
NCBI-GeneID:
107904760
NCBI-ProteinID:
XP_016686730
UniProt:
A0A1U8J8R8
LinkDB
All DBs
Position
A12:109061011..109068161
Genome browser
AA seq
1059 aa
AA seq
DB search
MGRKKRSDNPSGGESSQSHDTGAGSGQGPQRPPQQQGGSGGYSGGRGWAPQSQQGGRGGY
GSGGRGRGMPQQQYGGGPPEYQGRGRGGSSQQGGRGGYGGGRGRGGRGGGPFAGGPSRPP
VPELHQATQPMQVEVTRQPAPSEAGSSSRPPPEPVPLAEHYQQLSIQQEAGQAIQPVPPS
SKSVRFPLRPGKGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVASRGVNRAVMEQLV
KLYRESHLGKRLPAYDGRKSLYTAGPLPFVSKEFKITLTDEDDGSGQPRRDRDFKVVIKL
AARADLHHLGLFLQGKQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGE
GLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSRPLSDADRVKI
KKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDDRGTMKSVVEYFHETYGFIIQ
HAQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNEKQITALLKVTCQRPQEREYDIMK
TVQHNAYHEDPYAKEFGIKISEKLASVEARILPPPWLKYHDTGREKDCLPQVGQWNMMNK
KMVNGGTVNNWICINFSRLVQDSVARGFCYELAQMCYISGMAFNPEPVLPPISARPESVE
KVLKTRYHDAMIKLQPQNKEIDLLIVILPDNNGSLYGDLKRICETDLGIVSQCCLTKHVF
RMSKQYLANVALKXNVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPS
IAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGTVSGGMIKELLISFRRA
TGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLF
ANNHSDRRAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKF
TADALQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSATAAG
RGGGAAAAGGRSTRGPGASAAVRPLPALKENVKRVMFYC
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgggtaggaagaagagaagtgataatccttctggaggcgagagctcccagtctcatgat
actggtgctggcagtggtcagggtccccaacgtcctcctcaacaacaagggggaagtgga
ggttactcgggtggacgaggttgggctccacaatctcagcaaggaggtcggggtggttat
ggctctggtggtcggggtcgtggaatgccacaacagcagtatggtggaggacctcctgaa
taccaaggtagaggaaggggaggttcttctcagcaaggaggtcgtgggggatatggtggc
ggtcgaggccgtggtggccgtggtggaggaccttttgctggtggaccatcccgaccacct
gttcccgagctgcaccaagcaacccaacctatgcaagttgaggtgacccgccagcctgct
ccgtctgaggcaggctcatcatccaggccaccacctgagcctgtaccattggctgagcat
tatcaacagctttccatccagcaagaagctggccaagcaattcagccagttcctccatca
agcaagtcagtgaggtttcctcttcgacctggaaagggtagcactggcacaaggtgcatt
gtcaaagctaatcatttctttgctgaattgccagataaagatttgcaccagtatgatgtt
actattacaccggaggtagcatctcgaggagtgaaccgggctgtcatggagcagctagtg
aaattatatagagaatcacatctaggaaagcgccttcctgcttatgatggccggaagagt
ctttacactgctgggcctctcccttttgtgtccaaggagtttaagatcacccttactgat
gaggatgatggttcaggacagccaagaagggaccgggattttaaagttgtaatcaaattg
gctgctcgtgctgatctgcaccatcttggactctttttgcaagggaaacaagctgatgca
cctcaggaagctcttcaggttcttgacattgttcttcgagaattacctactaccaggtat
tgtcctgttggacgttcattctactcacctgacctagggagaaggcagcctttgggtgag
ggattagaaagctggcgtggtttttatcaaagcattcgtcctacacagatgggactatcg
ctgaatattgatatgtcttctactgctttcattgagcctttgcctgttattgattttgta
acacaattgctaaaccgtgatgtttctagaccactatctgatgctgatcgcgtgaagatt
aaaaaggctcttagaggagtcaaagtagaagttacacaccgtggcaacatgcggagaaaa
tatcgaatatcaggtttaacatcacaagcaactagagagttgacttttcctgtagatgat
agaggcacaatgaaatctgttgtggagtattttcatgaaacttacggtttcatcattcaa
catgcccaatggccttgtctacaagttggaaaccagcagagaccaaattatttgccaatg
gaggtatgcaagattgttgagggtcagaggtactcgaagagattgaatgagaaacagatt
actgctttactgaaggtcacctgccagcgtcctcaggaaagagagtatgatattatgaag
acggtgcaacataatgcttatcatgaagacccttatgctaaggaatttggaattaaaatc
agtgagaagcttgcttcagttgaagcgcgtattctgcctccgccgtggcttaaatatcat
gatactggtagagagaaggattgcctgcctcaggttgggcaatggaatatgatgaacaag
aaaatggttaatggtgggactgtaaacaactggatctgcataaacttttctcggctagtc
caagatagtgtggcacgggggttttgttatgagcttgcacaaatgtgttatatctctggc
atggcctttaatcctgaaccagtgcttcctccaattagtgctcgtcctgagtctgttgag
aaggttttgaaaacacgatatcatgatgccatgattaaactgcagccccagaacaaagag
attgacctgcttattgttattcttccagataataatggctctctttatggtgatttgaaa
aggatttgtgagactgatcttggtattgtttcccagtgctgcttgactaaacatgtattt
agaatgagcaaacaatatttggccaatgtggcattgaaanttaatgtaaaggttggggga
agaaatactgttcttgttgatgcaatatcacgaaggatacctcttgtcagtgaccgtcca
actataatttttggcgctgatgttacccatcctcaccctggggaggattcaagcccttct
attgcagctgttgttgcctctcaagattggccagaggttacaaagtatgctggcctggtt
tgtgctcaagctcatcgtcaggagctcatccaagatttattcaagacatggcaggatccc
gtaagggggactgtttctggtggcatgattaaggagctcctaatatctttccgacgagcc
actggacagaagccacagcgcattatattctacagggatggtgtcagcgaaggccagttc
tatcaagttctgttatatgaacttgatgctattcgtaaggcatgtgcctcgttggagcca
aattatcagcctcctgttacttttgttgtggtgcaaaaaaggcatcatacaaggttgttt
gctaacaatcatagtgatcgccgtgctgtagacaggagtgggaacattttgcctggcact
gtggtggactccaaaatttgtcacccaacggagtttgacttctacctatgcagccatgct
gggattcagggtacaagccgtccagctcattaccatgtgctatgggatgagaacaagttt
acagctgatgcattacaatctctcacaaataacctttgctatacatatgcaaggtgcaca
cgatcagtgtctattgttccccctgcgtactacgcacatcttgctgcattccgagctcgg
ttttatatggaaccagaaacatcagacagtggatcaatgacaagtgccacagctgcaggg
cgtggaggtggagctgcagctgctggtgggcgtagcacaagaggacctggtgctagtgct
gccgtcagacctctgcctgccctcaaggaaaatgtcaagcgtgttatgttctactgttaa
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