Gossypium hirsutum (upland cotton): 107906289
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Entry
107906289 CDS
T04793
Name
(RefSeq) transcription initiation factor TFIID subunit 15b-like isoform X1
KO
K13098
RNA-binding protein FUS
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107906289
09122 Translation
03015 mRNA surveillance pathway
107906289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107906289
Spliceosome [BR:
ghi03041
]
Complex A
Other components
Complex A specific factors
107906289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
zf-RanBP
Motif
Other DBs
NCBI-GeneID:
107906289
NCBI-ProteinID:
XP_016688736
UniProt:
A0A1U8JES4
LinkDB
All DBs
Position
D05:9153154..9156608
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AA seq
408 aa
AA seq
DB search
MYGQDGGQVAHPYGGGGGGGGGGNSGYVGGRGGGGGYGPSSKNRGGAGGYQGGDSGRGGG
RGGGGRDGGWLCPNPSCGNLNFTRRVECNKCGASSPVGSGDRGSNGYNRGSTGGYGGNRG
GRGDGARGGYDSGRNNNYAGRGGNYDNRSGGYGHVPPPSPSAYSGSASGNYPPAPNAYDG
NTNYGMDAVPPPASYTGGPTSYPPSYGGPAGGYGGEGLSDVRSGGRGGHASGYDSGYGPG
GPCHQGGGYGGHSADAPFKIKQCDDTCGDSCDNTRIYISNLPTDITIEELRDLFGGIGQV
GRIKQKRGYKDQWPWNIKIYEDEKGNQKGDAVLTYEDPQAALSAGSFSNNHVMRGYTINV
AMAEKTAPKVYDHVGRKGGYGDRRRDNYRGGGSGPDRHHYGGNRSRPY
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgtacggtcaggacggaggtcaagttgcccatccttacggtggtggtggtggtggtggt
ggtggtggaaatagcggttatgttggcggccgaggaggaggtgggggatacggtcctagt
tctaaaaatcgcggaggtgctggaggttatcaaggaggagacagtggaagaggtggtggc
cgtggtggaggaggcagagacggtggttggctttgcccgaatcccagttgtgggaatttg
aactttacaagaagagttgagtgtaacaaatgcggtgcatcctcacctgtgggttctggt
gatcgtggtagtaatggttataacagaggtagcactgggggatatggtggtaaccgtgga
ggtagaggagatggggctagaggtggatatgatagtgggaggaataacaactatgcaggc
agaggtggaaattatgataatagaagtggtgggtatggtcatgttcctcctccatcaccc
agtgcttatagtggcagtgctagtggaaattatccacctgctcctaatgcatatgatggg
aatacaaattatggaatggatgcagttcctcctcctgcaagctatactggtggacccaca
tcatacccaccatcttatggtggccctgcaggtggttatggtggcgagggtttgagtgat
gtgagaagtggtggccggggtggtcatgctagtggatatgacagtgggtatgggcctggt
ggtccttgtcatcagggaggtggttatggaggtcattcggccgatgcaccatttaagatc
aagcagtgtgatgacacctgtggggattcttgtgacaacacaagaatctacatatcaaat
ttgccgaccgatattactattgaagaattaagggacctttttggcggcattggacaagta
ggaagaattaaacagaagcgcggctataaagatcagtggccatggaatattaaaatatac
gaggatgagaaaggaaaccagaaaggtgatgcagttttgacatatgaagatcctcaagca
gcactctctgctggcagtttctctaacaatcatgtcatgagaggctatacaattaatgtg
gctatggcagagaagactgcacctaaagtatatgatcatgtaggcaggaaaggtggctat
ggggacaggcgcagggataattacagaggtggaggatctgggccagatagacatcactat
ggtggaaaccgttcacgcccatactga
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