Gossypium hirsutum (upland cotton): 107906509
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Entry
107906509 CDS
T04793
Name
(RefSeq) serine/arginine-rich splicing factor RS40-like isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107906509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107906509
Spliceosome [BR:
ghi03041
]
Common components
Common spliceosomal components
SR proteins
107906509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RNA_bind
Nup35_RRM
RRM_5
DUF2129
Motif
Other DBs
NCBI-GeneID:
107906509
NCBI-ProteinID:
XP_040939702
LinkDB
All DBs
Position
A12:complement(107772774..107776883)
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AA seq
375 aa
AA seq
DB search
MRPIFCGNFEYDARQSDLERLFRKFGRIERVDMKSGFAFIYMEDERDAEDAIRALDRTEF
GQKGRRLRVEWTKHERGIRRPEGGGGGSRRSAANTRPSKTLFVINFDPYHTRTRDLERHF
ESYGKIVSVRIRRNFAFVQYDSQDDATRALEATNMSKLMDRVISVEYAVRDDDDRRNGYS
PERGRDRSPERGRDRRRSPSPFRRERGSPDYGRGSSRSPYRKERGSPDYGRGHGPSLYKR
DRGSPEYGQITSRSPQRRERTSFDHARGSSRSPFRKERASPENIQGSSRSPYRKEKRSAE
NDRSPSRSPYRRERPTSDNGRAPSHSPYGRERISPENGRGSSPGSMPERRASPYGGEAES
PVNERYGSQSPAAEE
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgagacccattttctgtggaaactttgagtatgatgcacggcagtctgatttggaacga
ctcttcagaaaatttgggagaatcgaaagagtagatatgaagtctggatttgctttcata
tatatggaagatgagagagatgctgaagatgccatccgagcacttgatcgaacagaattt
ggtcagaaaggacgtaggcttcgtgttgaatggacaaagcatgagcgtggcattagaagg
cccgagggtgggggcggtggatcaagaagatctgcagcaaatacaagaccttcaaagact
ttatttgtcatcaattttgatccttaccacactcgaactagggatttggaaaggcacttc
gagtcatatggaaagattgtaagtgtaaggatcagaaggaattttgcatttgtacaatat
gattcccaagatgatgccaccagggctttggaggctacaaatatgagcaagctgatggat
agagttatttcagttgaatatgcagtacgagatgatgatgatcgtcgaaatggatatagc
cctgagagaggtcgtgataggtcacctgagagaggtcgtgacaggagacgatctccaagt
cccttccgaagagagaggggtagccccgattatggtcgtggctctagtcgtagcccttat
aggaaggagagggggagccctgattatggtcgtggccacggtccaagtctttataagaga
gatagaggtagccctgagtatggccagatcaccagccgtagtcctcagagaagagagagg
accagctttgaccatgctcgtggctccagccgaagtcctttcaggaaagagagggctagc
cctgagaatatccaaggctctagccgcagtccttataggaaagagaagcgtagtgctgaa
aatgatcgtagccccagtcgcagtccatatagaagagaaaggcccacttctgacaatggt
cgtgcacccagccatagcccatatggaagagagagaattagcccagagaatggccgtggt
agcagccctggttctatgccagaaagaagggccagcccttatggtggtgaagctgaaagc
ccagtcaatgaaagatatggaagtcaatctcctgcagcagaggaatga
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