Gossypium hirsutum (upland cotton): 107911046
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Entry
107911046 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 6-like
Organism
ghi
Gossypium hirsutum (upland cotton)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DRMBL
DNA_ligase_A_C
UBA_4
RMMBL
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
107911046
NCBI-ProteinID:
XP_040962320
LinkDB
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Position
D11:complement(19219165..19230646)
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AA seq
1406 aa
AA seq
DB search
MSSQGTATATKTLALDSTQLYLTAIDSSDSTLSFPPIPSSFPPSKLIPNTRFLVDSFRHS
TTTTFSAAYFLSHFHSDHYSGLSPSWSKGIIFCSHLTSLLLIQTLKIPPHFVFPLPLNDP
VVVDGCEVILIDANHCPGAVQFLFKVPTKNGSFERYVHTGDCRYCNSMKLNSYLNDFVGC
DTIFLDTTYCNPKFVFPSQEESVDYVVSVVDRIGKEFKEKKVLFLVATYVVGKEKILVEV
ARRCKRKIFVDGRKMEILNVLGYGGDKVFTVDESESNVHVVGWNVLGETWPYFRPNFVRM
KEIMEEKGYEKIVGFVPTGWTYEIKRNKFAVRSKGSIEIHLVPYSEHSNYDELREYVKFL
KPKRVIPTVGMDIEKLDSKHADKLRRHFAGLVDEMANKKDFLMGFHRGNYGSVEKVEMDA
SPNLNENKDMERKKNILEMKSVESKNADITLNDSSPVQKPDSQDSAIPSEEERERKIEEL
GDFLPRWVTRDQKLNLISSSRWNVVEAVSNFYEHENELYEQISAFRTSDSASAAQAGSSN
NSVSPLNSGPFRSSSHESLISHLSQASKPSSFKLSVWSNISPGKRKKNTENKSNKKVKSN
SKLESSGSKQPMITSFFGKVLVDDSKGGGTGLKIEECPKEEITLPGDLTKSFTEKIDQFI
QIINGNESSRNYVVNLLEKTQGDINRALDIYYSNPEVNHDENMENIVVSSKSAPVWSCSN
DCPVSKNEHVLEESRSIPDSSLQGQPVENVDVTLVSLPPDKYKRIEHACWRSDQPAPYVH
LARTFDLVGSQRGKIKATSMLCNMFRSLLALSPEDVLPAVYLCTNKIAADHENIELNIGG
SLVTSALEEACGTNRSKIRDMYNDMDDLGDVAQACRQIQTLLAPPRPLLIRDVYSVLRKI
SVQTGSGSTMRKKNLIVNLILSCREKEMKFLVRTLVRNLRIGAMMKTVLPALAQAVVMNS
SRDLCHEGTADCLKEKLQELSTAVTEAYNVLPNLDLLVPSLMKEGIAFSSSTLSMVPGIP
IKPMLAKITNGVPEVLKLFQNKAFTCEYKYDGXRVQVHKLANGAVRVFSRNGDETTLRFP
DLINTIKESAKPAAPTFILDAEVVAIDRKNGQKLMSFQELSSRERGSKDSLITVDKIKVN
ICVFVFDIMFANGEQLLGVPLRQRRKCLKDLFHDEKLGHFEYAKEITVEADDACLTSEAT
FTQINSFLEDALQFSCEGIMVKALDTDAGYLPSKRSDTWLKVKRDYVEGLSDSLDLVPIG
AWHGNGRKAGWYSPFLMACYNPDTEDFQSVCRVMSGFSDSFYKEMKEFFSGDRILAKKPA
YYQTAEVPDMWFFPELIWEIRGADFTVSPVHQAAIGLVHPSRGISIRFPRFIRPVTDRNP
EECSTAADVAEMFHSQTRKMDVTAQQ
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctcaagggacggccaccgccaccaaaacacttgcgctagactccacccaacta
tacctcactgccatagactcttccgattccaccctttcttttccccctatcccctcctct
ttccctccctctaaactcatacccaatacccgattccttgtcgactccttccgccactcc
accaccaccaccttctccgccgcctacttcctctcccacttccactccgaccactactcc
ggcctctccccttcctggtccaaaggcatcatcttttgttcccacctcacttccctcctc
ctcatccaaacccttaaaatcccgcctcatttcgtcttccctttacctctaaacgacccc
gttgtggtagatggctgcgaggtcattctcattgacgccaatcattgccccggtgctgtc
cagttcttattcaaagttcccacaaaaaatgggagctttgaaaggtatgttcacacgggt
gattgccgttattgtaattcgatgaagttgaatagttatttgaatgactttgttggttgt
gatacgatttttttagatactacttattgtaatccaaaattcgtgtttccttctcaagaa
gaatcggttgattatgtagttagtgtggtagataggataggaaaggaatttaaggaaaaa
aaggttttgtttcttgttgccacttatgttgttggaaaagagaagattttggttgaggtc
gcgaggcgatgtaagaggaaaatatttgttgatgggaggaaaatggagattttaaatgtt
ttggggtatgggggtgataaagttttcaccgtagatgagagcgagagtaacgttcatgtt
gttggttggaatgtattaggcgagacttggccgtattttcggccgaattttgtgagaatg
aaagagattatggaggaaaaagggtatgagaagattgttggttttgtgccgactgggtgg
acttatgaaattaaacggaataaatttgcagtgaggtcaaaaggttcaatcgagatacat
ctagtcccttacagtgagcattctaattatgatgagcttagagaatatgtgaagtttttg
aaaccaaagagagttattcctactgttggtatggacattgagaagcttgacagtaagcat
gctgataaattgagaaggcactttgctggtctggttgatgaaatggcaaataaaaaggac
ttcctgatgggttttcatcgtggcaattatgggagtgtagaaaaagttgaaatggatgct
agtcccaacttgaatgagaacaaggacatggagagaaagaaaaatatattggaaatgaaa
tctgttgagagtaaaaatgcagatattactttgaatgattcatctcctgtgcagaaacct
gattcacaagattcagctataccgagtgaggaggaaagagagagaaagattgaggaatta
ggtgactttttgcccagatgggtgaccagggaccagaaattaaatttgatcagcagctca
agatggaatgttgttgaagcagtttctaatttttatgaacatgaaaatgagttatacgag
caaatctctgcttttagaacttctgattctgcctctgctgctcaggcaggttcatctaac
aactctgtctcacctttgaattcagggccctttagaagtagcagtcatgaaagtttaatc
agtcatttaagtcaagccagcaagccttctagttttaaactttcagtttggagtaacata
tctcctggtaaaaggaagaaaaatactgagaacaagtcaaataagaaagtaaaaagcaac
tcaaaactggaatctagcgggtcaaagcaacctatgataactagcttcttcggtaaagtt
ttggttgatgactctaaaggtggtgggactggcttgaaaattgaggaatgccctaaagaa
gaaatcactttgcctggtgacttgactaaatcatttacagagaaaatagatcagtttatt
cagataataaatggcaatgaatcgtcaagaaattatgtggtcaacttacttgagaagacc
caaggagatatcaacagggcactggatatatattatagtaatcctgaagtgaaccatgat
gagaatatggaaaatattgtagtttccagcaaatcagctccggtctggagctgtagtaat
gattgccctgttagcaagaatgaacatgtgctggaggagtcaagatctattccggattca
tctttgcaaggacaaccagtggaaaatgttgacgtaactcttgtatcattgcctcctgat
aaatataaacgcattgagcatgcatgctggaggtctgaccagcctgctccatatgtccat
cttgcacggacttttgaccttgttggcagtcaaaggggcaagatcaaagctacttctatg
ctttgcaatatgtttaggagtttgctggccttgtcccccgaggatgtgcttcctgctgtg
tatctgtgcaccaacaaaattgccgctgatcatgaaaatattgaattgaatattggcggt
agtttggttacatctgcactggaagaagcttgtgggactaaccgttcaaaaataagggat
atgtacaatgacatggatgatcttggtgatgttgcacaagcatgccgacaaatccaaact
ttacttgctcctccacgaccactattaattagggatgtatattctgtgcttcggaagata
agtgtacaaacaggcagcggcagcaccatgcggaagaaaaaccttatcgtgaatcttata
ctttcatgtagagagaaagagatgaagtttctagtgagaactttggtcaggaatttgcga
ataggagcaatgatgaaaactgttcttcctgcattggctcaagcagttgtcatgaattcc
tctcgtgatctttgtcatgaagggacagcagattgtctaaaagaaaagctccaggaactt
tctacagcagtaaccgaagcatataatgtacttccaaatttggatttgcttgttccttca
ctaatgaaggaaggtattgcattttcatcatcaaccttgtcaatggttccgggaatacct
attaaacccatgcttgcaaaaattaccaatggggttccagaagtactgaagctttttcaa
aacaaagcttttacatgtgaatataaatatgatggttagcgtgtccaggttcacaaattg
gctaatggagcagtgcgtgtcttttcacgaaatggggatgaaacaacattaagatttcca
gatttaattaatacaattaaagaatctgctaagcctgctgccccgactttcatattggat
gctgaggtagttgcaatcgataggaagaatggtcagaagctgatgtccttccaagaatta
tcttcaagagaaagagggagcaaagattctttgatcacagtggacaaaataaaggttaat
atttgcgtatttgtgtttgacatcatgtttgctaatggagagcagctgctaggtgttcct
ctacgccaaagaaggaaatgtttgaaggatttgtttcatgacgagaagttgggtcatttt
gaatatgcaaaagaaatcacagtggaagcagatgatgcttgtttgaccagtgaggccacg
tttactcagataaactcttttctcgaagatgcattgcagttctcatgtgaaggaattatg
gttaaagccttagatactgatgctggataccttccgtcaaaacgtagtgatacatggtta
aaggtgaagcgagactatgtggaaggattaagcgattcccttgatttagtcccaattggt
gcttggcatggcaatggaagaaaagcgggatggtacagccccttcctcatggcatgctat
aacccagacactgaagattttcaaagtgtttgtcgtgttatgtctggattctctgattca
ttttacaaagagatgaaagagttcttttcgggggataggatcttagccaaaaagccagct
tactatcaaacagctgaggtgcctgatatgtggttctttccagaacttatttgggaaata
agaggtgcagacttcactgtatcaccggttcatcaggctgcgatagggttagttcatcca
tcgcgtggcatctcaataagatttcctaggttcattcgcccggtcacagatcgaaatcct
gaggaatgtagcacggcagcagacgtagctgaaatgtttcattcgcagactcgaaagatg
gatgtgacggcccaacaatga
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