Gossypium hirsutum (upland cotton): 107911053
Help
Entry
107911053 CDS
T04793
Name
(RefSeq) serine/arginine-rich splicing factor SR45
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107911053
03015 mRNA surveillance pathway
107911053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107911053
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107911053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_occluded
RRM_3
Motif
Other DBs
NCBI-GeneID:
107911053
NCBI-ProteinID:
XP_040941321
LinkDB
All DBs
Position
A13:complement(99062200..99073229)
Genome browser
AA seq
419 aa
AA seq
DB search
MAKPTTRGRRSPSISGSSSRSRSRSKSRSRSYSGSDSKSSSRSRSVSRSRSASPSSSRSR
SSFSSSPSRSGRSRSRSPPKRRSPVPGSRRGNSPPPQSKKSSPAPRKASPIRESLVLYVD
SLSRNVNEGHLKEIFSNFGEVVNVDLAMDRILNLPRGYGYVEFKTRADAEKALLYVDGAQ
IDGNVVRAKFTLPPRPKVSPPPKPISSAAKGDVPKSDNASADIERGGPKRPRESSPQRKS
LPSPRQGSPVGRRGGSPRRPPESPRRRVDSPVRRNGETPPRRSPASPVRGRSPLSPPRRL
RSPPRASPRRMRSPIRRRSPPPRRRSPPRRARSPPRRSPLGRRRSRSPIRRPARSRSRSF
SPRRGKGPAARRGRSSSYSRSPSPRKVPRRISRSRSPRRPLRGRSSSNSSSNTSPPRKP
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagccgacgacgagaggccgtcgctcaccttctatctccggctcctcttcccgt
tctcggtcacggtccaagtctcgttcccgctcttattccggctccgactcaaagtctagt
tcccgttctcgctctgtgtccaggtcgagatccgcttctccttctagctctcgctccaga
tcttccttctcttcttctccttctcgtagcggtcgctctcgaagtcgcagccctcctaag
cgccgaagtcctgtgcctggatctaggcgaggtaattcccctccaccacaatctaaaaag
tcatctccagccccaaggaaggcttctcccatccgtgagtctctggttctctatgttgac
tcactgagcaggaatgtcaatgaaggccatctaaaagaaatattcagtaattttggtgaa
gttgtaaatgtggatctagccatggaccgtattcttaatcttccgcgaggatatggctat
gttgaattcaagacaagagcagatgctgaaaaagctctactttacgtggatggtgctcag
attgatggcaatgttgtaagagcgaagtttacacttcctccacgaccaaaagtttcacca
cctccaaagccaatttcttctgctgctaaaggagatgttcctaaatctgataatgccagt
gctgatattgagaggggtgggccaaagcgaccacgggagtcttcacctcaacggaaatcc
ctgccttcacctagacagggatcacctgttggtcgaagaggtggatctcccagacgacca
ccagagtctccacgtcgtcgagtagattctcctgttcgtcgtaatggtgaaacacctccc
aggcgcagccctgcatctcctgtcagaggtcgttctccgttgtctcctccaaggcggctt
agatctcccccaagggcatctcctcgcaggatgcgtagtccaatccgaagacgttctcct
cctccaaggcgccgttcacctcctagacgtgcacgtagtcctccaagaaggtctcctcta
ggtcgtagacggagccgttctccaattcgtagacccgctcgttctcgttcaaggtcattc
tcacctcgtagaggtaaaggaccagcagcgagacgtgggaggtcatcatcctattccaga
tcacctagcccccggaaggtaccgaggaggatttctaggagccgcagtcctagaaggcca
ttgaggggaagaagcagcagcaacagcagtagcaatacttctccgcctcgtaagccgtaa
DBGET
integrated database retrieval system
