Gossypium hirsutum (upland cotton): 107912556
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Entry
107912556 CDS
T04793
Name
(RefSeq) nuclear pore complex protein NUP62
KO
K14306
nuclear pore complex protein Nup62
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107912556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107912556
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
107912556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nsp1_C
ATG17_like
COG3_N
SGT1
FapA
DUF1664
Motif
Other DBs
NCBI-GeneID:
107912556
NCBI-ProteinID:
XP_016696277
UniProt:
A0A1U8K198
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All DBs
Position
D11:complement(14636677..14642984)
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AA seq
786 aa
AA seq
DB search
MADNPFNPSGGFGTSSSLFGASSGSSPFSSSSATGPFSFASSSSSASTATTVTTPSFSGL
FSSSSASNSATTSPFGAAGFSFSVGSPFSSSSASSNTTAASTAAASTSSSTSGFSFAPSS
SFGFGNPASSSSPASVFSEKVGASSSPFGASSGSTLFSSSPAPATSSSFGSSSSSSAAAP
APSFSSFISSSSASNSTTTSPFSSSTGFSFLGGSSFGKSTESSTTTATFTTAPSLTAASS
SSSSSGFSFSLPSSASQPTFGYGNAASSSSSSSAPTVPGTFGTSSSPFGASSGSPLFSSS
QAPATTTTTTAAMSSFGSLCSPSTATATTPSFPSLSSSSTASSTGFSFGGSSPFLKSTAS
STPTSTYTTAPSLAAAASSSSSSFSFASPSASQPAYGFGNAASSSTPAPTLSGSAVSKPT
SLSFGTSSAPLFSTVTTTTASTPAASTTTASTPAFPAFNLSSSSSSATASSAAPASSAAT
SAAVSSLTGFGVTNVAATSGSSGSFSGFSLSTKPSTPASSSQAQAIATAPVFSLTASGSS
ASTTSTSISTSAQTSSALVVASSSGTSSSATAAVSTTPKLPSEITGKTVEEIIKEWNAEL
QERTGKFRKQASAIAEWDRRILQNRDVLLRLEIEVAKVVETQASLERQLELIETHQQEVD
KALQSMEEEAERIYKDERGLLLDDEAASTRDAMYEQAENVERELEHMTEQIKSIIETVNS
SQGGELEALDGMTPLDVVVKILNNQLTSLMWIDEKAEEFSGRIRKLAAQGNAADGELIAA
PKYWMS
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atggccgataatcccttcaatccttcgggagggtttgggacatcctcatccctatttgga
gccagcagtggttcttctccattttcatcttcatctgctactggcccttttagttttgca
tcttcgtcttcatcagcttctactgctactactgttacaactccatcgttttcaggcttg
ttttcgtcaagttcagcttcaaattcagccactacatcgcctttcggtgctgctgggttc
tctttctcagttggttcgccattttcttcaagtagcgctagttcgaatacaacagcagcc
tctactgcagcagcttctacttcttctagcacttcaggcttctcttttgctccatcttct
tcctttggatttggcaatccagcttcatcatcatctccggcatccgtattctctgaaaag
gtcggggcatcatcttccccgttcggtgccagcagtggttcaactttattttcatcttca
cctgcaccggctacttcaagctcttttggttcttcgtcttcatcttcagcagcagcccca
gccccatctttttcaagcttcatatcttcgagctcagcttcaaattctaccaccacttca
cctttctcatcttctacagggttctccttcctgggtggttcatcttttggaaagagcact
gaaagttcgactacaacagcaacctttactacagcaccttccttaacagctgcttcttct
tcatcaagttcttcaggcttctctttttccctcccttcttcagcctctcaacctaccttt
ggttatggcaatgcagcttcatcttcgtcatcatcatcagcacccacagtccctgggaca
tttgggacatcttcatccccatttggagccagtagtggttcccctctattttcatcttca
caagcaccggctaccactactaccactactgctgctatgagctcttttggttctttatgt
tcaccttctactgctacagctactactccatcttttccaagcttatcatcatcgagcaca
gcttcttctacgggattctcttttgggggtagttcaccatttttgaagagcactgctagt
tcaacaccaacatccacctatactacagcaccttctttagcagctgctgcttcatcaagc
tcttcaagcttctcatttgcctcgccttcagcttctcaacctgcatatggatttggcaat
gcagcttcatcatcaacacctgcacccacattgtctggctctgctgtgtcaaaacccact
tccttgtcttttggaacatcatcagcgccattgttttcgactgttactaccacaactgct
tctacccctgcagctagtactaccactgcttcaactccagcattcccggcctttaactta
agttcttcgtcttcttctgctacagcttcatcagctgcacctgctagttcagctgctaca
tcagctgctgtgagttctttgactggatttggtgtgacaaatgtagccgctacatctggg
agttctggttctttctctggcttttctttatcaacaaaaccatccactcctgcttcgtcc
tcacaagcacaagccattgccactgctcctgtattcagtctcactgcttctggttcttct
gcttcaacaacttcaacttccattagtacttctgcccaaacatcatcggcacttgttgta
gcttcaagtagtgggacaagttcaagtgctactgctgcagtatctaccaccccaaaatta
ccttcggagataaccggaaagacagtggaggagatcatcaaggaatggaatgctgaactg
caagaacgcactggaaaatttcgaaagcaggctagtgcaattgctgagtgggataggcga
atcttgcagaatcgtgatgttcttcttaggcttgagattgaagtggcaaaagtggttgag
acccaagctagcttggagcgacaactggagttaattgagactcaccaacaagaggttgat
aaggctttgcaaagtatggaagaagaagcagaacgaatttataaagatgagcgtggattg
cttcttgatgatgaagctgcgtcaacaagagatgcaatgtatgagcaggcagaaaatgtg
gagagggaactggagcatatgacggaacagatcaagtcgattattgagacagtaaactct
agtcagggtggggaactcgaggcacttgacggaatgactcccctagatgtggtggtcaag
atcttgaataatcaactaacttctttaatgtggatcgatgagaaggctgaggaattctct
ggtcgtattcggaagcttgcagcccagggtaatgctgcagatggagaattaattgctgct
ccaaaatattggatgtcctga
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