Gossypium hirsutum (upland cotton): 107914725
Help
Entry
107914725 CDS
T04793
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 21
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107914725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107914725
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107914725
Spliceosome [BR:
ghi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
107914725
Complex C
U5 SnRNP specific factors
107914725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Dynactin_p62
Motif
Other DBs
NCBI-GeneID:
107914725
NCBI-ProteinID:
XP_016699231
UniProt:
A0A1U8K9P4
LinkDB
All DBs
Position
D10:complement(25095218..25097625)
Genome browser
AA seq
671 aa
AA seq
DB search
MNPPKPVFFTKAQREHLSLQRRLEYLRRSNDTANNTSYSHSVKPSSDSYDFRDRERQRER
DRESDRRNREREREEEAKARERARLDKLAEREREKELDKLAAVKKQYLGSKKPKKRVIKP
SEKFRFSFDWENTEDTSRDMNSLYKNPHEAQLLFDRGFRAGMDRRDQKKLAAKNEEMREE
IRKKEGVKEKPEEAAVQRLKEAAANTYDTFDMRVDKHWSEKKLEEMTERDWRFFREDFNI
SHEGSKIPRPMRSWSESKLSSELLKGVERVGYKKPSPLQLAAILLGLQQRDVIGIAETGL
GKTAAFVWPMLSYISRLPPSEENEAEGPYTVVMAPTRELAQQFEDETMKFAHYLGIKVVP
IVGDQSIEEQRFRIRQGCEVVIAMPGRLLDCLERRYAVLNQCNYVVLDEADRMIDTGFEP
QVVGVLDAVPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPAVVTIG
TAGKATDLISQHVIIMKESDKFPRLQKLLDDLGDKTAIVFVNTKKNADAISKNLDKAGYK
VTTLQGGRSQEQREISLDGFRAKRFNVLVATDVAGRGIDIPDVANVINYDMANSIEMYTH
HIGRTERAGKTGVATTFLTLHDTDVFFDLKRMLVQSGSPVPPELAKHEASKFKPGTIPDR
PPRRNDTVFAH
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctcctaaacccgtcttttttaccaaagcccaacgcgaacacctttcgctccag
cgccgcctcgaatacctccgccgttctaatgacaccgccaacaacacctcttattcccat
tctgttaagccctcctccgactcctacgacttccgcgaccgcgaacggcagcgggagagg
gatcgcgaatccgaccggaggaaccgtgaacgtgagagggaggaggaagccaaggctcga
gagcgggcgcggttggataagctagctgagagggaaagggaaaaggaattggataagcta
gctgcagttaagaagcagtacctcggatccaaaaagcctaaaaagagggttattaaacct
agcgagaaatttaggttttctttcgattgggagaacaccgaagatacttccagagacatg
aattctttgtacaaaaaccctcacgaggcacagcttttgtttgaccgagggtttagggct
ggaatggatcgcagggaccagaaaaagctggccgccaaaaatgaggagatgagagaagag
attaggaaaaaagaaggggttaaagagaagccagaggaagccgcggtgcagaggttaaaa
gaagctgcagctaatacttacgatacattcgatatgagagttgataagcattggtctgaa
aagaagcttgaagaaatgactgaacgtgactggaggttttttagggaagatttcaacatt
tcccatgaagggtcgaagattccacggccaatgaggagttggagtgagagtaaattgagt
tccgagttgttgaaaggtgtggagagagttgggtataagaagccttccccgttacagctt
gctgcgattcttctaggattgcagcaaagggatgtgattgggatcgctgagacaggatta
ggtaagactgctgcttttgtttggccaatgctttcttatatttctagattaccgcctagt
gaagagaatgaagctgaggggccatacactgttgttatggccccaactcgtgaacttgct
caacaatttgaagatgaaactatgaagtttgcgcattatttgggtattaaggtcgttcct
attgttggtgatcagtcaatagaggaacaacggtttaggattagacaagggtgtgaggtt
gttattgctatgcctggtcgtttgctggattgtttagagaggcggtatgctgtcttgaat
cagtgtaattatgtggttcttgatgaggctgataggatgatagatacgggttttgaaccc
caagttgtgggtgtattggatgctgtgccgtctagtaatttgaaaccagagaatgaagat
gaggagctagatgaaaaaaggatatataggactacttatatgtttagtgctacaatgcct
ccagctgtggagcgcctagctaggaagtatttgaggaatcctgctgtggtcactattggt
actgctggaaaggctactgatttaatttctcaacatgtgataataatgaaggaatcagat
aagtttccaagattgcagaaattgcttgatgatcttggggacaagacagcaatcgtgttt
gtcaatactaagaagaatgctgatgctatttctaagaatctggataaggctggttataag
gtaacaactttgcaaggtggaagatcgcaggagcagagggaaattagccttgacggtttt
agggccaagagattcaatgttcttgttgctacagatgttgcagggcgtgggattgatatt
cctgatgtggctaacgtcattaactatgatatggcgaatagtattgaaatgtacacacat
catattggaagaacagaacgtgcaggcaaaactggtgtggccacaacatttttgactctc
catgacactgatgtcttctttgatcttaagcggatgcttgttcaaagtggcagccctgtc
cctcctgagctggcaaagcatgaagcttctaagtttaaaccaggaacaattcctgataga
cctcctagacgcaatgacactgtttttgctcattga
DBGET
integrated database retrieval system
