Gossypium hirsutum (upland cotton): 107915621
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Entry
107915621 CDS
T04793
Name
(RefSeq) pre-mRNA splicing factor SR-like 1 isoform X1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107915621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107915621
Spliceosome [BR:
ghi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107915621
Complex C
U4/U6.U5 tri-SnRNP related factors
107915621
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
107915621
NCBI-ProteinID:
XP_016700249
UniProt:
A0A1U8KHS5
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Position
D08:complement(6926560..6931926)
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AA seq
420 aa
AA seq
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MEIQTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR
GPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAIGFLYLRYAADPKTLWSWFEPYIK
DEEEFSPGSSGRMTTMGVYVRDLLLGQYYFDTLFPRIPVPVLRQVTSNLEKMKLPTKPSG
STGDNNRHGSDDTARRPPSVKAALSVSFGQRAPHRASTRDSSPVRRTLPPSPYDRSSGDD
ARRSPSHRRSQSRDREYSDKDRDRNRDRDRERERSRDQDRGWGRDRDRERDRSRDRDRDR
DWDRNRERNREREREREQRHDYDRRSRYADESRRYRSRSRSPSVSRNRSRSQSEQGGNSH
YDRLPSPSKEGSKASSNLAKLKDLYGDVSDTKGDDAGFERIAKRDNSGEEVIRLGGSSWK
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atggagatacagacatgtggtaaaccgattgattcgctgttagagaaggtgctttgtatg
aatatattatcctctgattatttcaaagagctttaccgattaaagacttaccatgaagtc
attgatgaaatttacaatcaagttgatcatgtcgaaccgtggatgactgggaattgtcgt
ggtccttctactgcattctgccttctttacaagttttttaccatgaaacttactgtcaag
caaatgcatgggctactgaagcaccctgattctccttacattagagcaattggattcctc
tacttgagatatgctgccgatccgaagactttatggagttggtttgaaccatacatcaaa
gatgaagaggaattctcccctggatctagtggacgaatgaccacaatgggcgtgtacgtg
cgtgatttacttcttggacagtactactttgatactcttttcccccgaatccctgttcct
gtgttgcggcaggtgacatccaatcttgagaagatgaagctgcctactaaaccttcaggt
tcaactggggataataaccgtcatggatctgatgacactgctcgccgcccaccttctgta
aaagcagcactttctgtctcctttggtcagcgtgccccccatcgggcatcgaccagggac
tcttcccctgtgcgtcgcactctacccccatcaccttatgacagatccagtggtgatgat
gcaaggaggtctcccagccaccgtcgcagccagagccgtgatagagagtattctgacaag
gatagggatcggaatcgtgatagggatagggaaagggagaggagcagggaccaagaccgg
ggttggggtcgggaccgtgatagggaacgagatagaagcagggatcgggatcgggatcgg
gattgggatcgtaatagagaaagaaacagagagagagagagggagagggagcaaagacat
gattatgatagaaggtcaaggtacgctgatgaaagtaggcgatacaggagcagaagccga
agtccgagtgtgagcagaaacaggagcagaagtcagagtgagcaaggtgggaacagtcat
tatgatcgacttccaagtccatcaaaagagggaagcaaggcatccagtaatttggcgaag
ctgaaagatctgtacggtgatgtaagtgatacaaagggagatgatgctgggttcgaaagg
atagcaaagagggacaacagtggtgaagaggtgattagactaggtggttcttcttggaaa
taa
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