Gossypium hirsutum (upland cotton): 107917004
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Entry
107917004 CDS
T04793
Name
(RefSeq) serine/arginine-rich splicing factor SR45a
KO
K12897
transformer-2 protein
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107917004
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ghi01009
]
107917004
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107917004
Protein phosphatases and associated proteins [BR:
ghi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
107917004
Spliceosome [BR:
ghi03041
]
Common components
Common spliceosomal components
SR proteins
107917004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_5
Motif
Other DBs
NCBI-GeneID:
107917004
NCBI-ProteinID:
XP_016701911
UniProt:
A0A1U8KH94
LinkDB
All DBs
Position
A02:107851690..107854567
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AA seq
225 aa
AA seq
DB search
MADSPRKRNSQSPSPWREQSRSRSRSRPRSRSRSRSRSWSRPRHRSRSHSRGRSRSRSRG
RVDAGNPGNTLYVTGLSQRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSV
EDASRCIKYLNQSILEGRFITVERSRRKRPRTPTPGHYLGLKNTRDYGRGERGRYRGGGR
DDYGYRRSPRRSPYRGRDYSPRYSPHGGRSRRERSYSPPYSRGSR
NT seq
678 nt
NT seq
+upstream
nt +downstream
nt
atggcggattctcctcgtaaaaggaattctcagtctccctccccatggagagaacagtca
aggtcacgatccagatctagacctaggtctaggtctaggtcaagatcccgctcctggtcg
aggccaaggcataggtccaggtcacatagtcgcggcaggtcaaggtcaagaagtcgaggc
agggttgacgctggaaatcctggcaacacactttatgtgaccggtctatctcaaagggtc
actgagagggaccttgaagagcatttctccaaggaggggaaggtggcatcgtgtttcctg
gttgttgaacctcgtactcgcatatctcgtggttttgcttttgttactatggacagtgtt
gaggatgcgagccgctgcatcaagtatctcaaccaatcaattttagaaggtcgatttata
accgtggagaggtcgcgtaggaaacggcctaggactccaacaccaggccattaccttgga
ctaaaaaataccagagactatggtcgtggtgagcgtggcaggtaccgtggtggtggtcgt
gatgactacgggtatcgtcgatctcccaggcgctcaccatatcgaggtcgtgattactct
ccaaggtattctcctcatggtggaagatcaaggagggagcgctcttattcaccaccatat
tctcgcggatctaggtga
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