Gossypium hirsutum (upland cotton): 107919802
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Entry
107919802 CDS
T04793
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107919802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107919802
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107919802
mRNA degradation factors
5'-3' decay
Decapping complex
107919802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
ATG2-VPS13_C
Motif
Other DBs
NCBI-GeneID:
107919802
NCBI-ProteinID:
XP_016704658
UniProt:
A0A1U8KUH5
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Position
D08:2946119..2952719
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AA seq
1354 aa
AA seq
DB search
MASTGNPNQTIPFDVQKFFKPTVSNPSNSNFQQQNLSSSPYPTPSPYPSPSPPFFHPQYH
QFYMPPSSPTHANYQDSKSLSFPSPPLSPYNAGTQILALINSSPQNPDFPPQNQPPKLQQ
PPHAEFLGSGGPNVGPSRVPSCKLPKGRRLSGTQVGYDIDTRLSGEVQPQLEVTPITKYG
SDPQLVLGRQIAVNKSYICYGLKGGSIRILNLNTALRSLFRGHTQRITDMAFFAEDVHLL
ASVSLEGRIFVWKVSEGPDEEEKPQITGKIVIAVQILGNEEYVNPRICWHRHKQEVLVAG
IGKHILRVDTMKVGKNEVFSTDAPSPLQCPIDKLIDGIQLVGKHDGEVTDVSMCQWMITR
LVSASTDGTIKIWDDRKSVPLTVLRPHDGQPVYSATFLTAPHRPDHIILITGGPLNQEIK
VWTSASEEGWLLPSNTEKWTCTQTLELKSSAEPQMEEAFFNQVVALSQAGLLLLANAKRN
AIYAVHLEYGSCPSASRMDYMAEFTVTMPILSFTGTSDPPDEHIVKIYCVQTQAIQQYAL
ELCQCIPPPLENIGLEKSDSSISRDAINTEGFDTFNPSGNKPSDLPLYTSVPKPSARVSS
SENLTAARYPSSPHSIEANTAQELNTSNIDPKPASSALASTASDADIVCVASPPTVPPSP
RLSRKPSGFHNYEDYPVDRQMDTVRSNLSGLHSSEDGSRNDDKKMVSDDKSGAYTPPIIF
KHPTHLVTPSEILMAATSSETTNVNEGKSEGEVHIQDVVVNNDARNAELEVKVVGEARSS
QNNEFGSHGDSQNRNLENREKFFCSQASDLGIQMSRESSAISRDAYVVDESQQADGVGAS
GSYVKPNIAEEEINDSRKDLSGKGLESAIPSTYQQSPTSGAKGKKHKGKGSQASAHTSPS
SSAFNSADSTTEPGANSNLPSAAAAFPQIAAMQDMLNQLITTQKEMQKQMSNIVNQPVTK
EGRRLEAALGRSIEKALKANTDALWARFQEENAKNEKLLREHTHQITSLITNFMNKDLAV
MLDKVVKKELAGVGPAVIRTITPAIEKTVTSVINESFQRGVGDKAVNQLEKSVNSKLEAI
VARQIQAQFQTSGKQALQEALRTSVEALVVPAFEISCKALFEQVDSAFQKGMVEHTNAAQ
QQLESASSSLAITLRDAINSASSIAKTLSGEFAEGQRKLLAIAAAGANSNAATSFSSQLS
NGPLGGLHDKVVVPMDPTKELSKLLSEGKYEEAFTIALQRSDLSIVSWLCSQVDLRTILS
TAPFPLSQGVLLSLLQQLACDINKDTPRKLTWMVDVATAINPGDQMIAVHVRPIFQEVYK
RVHEISSSPLLTGADHASIRALIYVINYVLMTCK
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaacggggaacccaaatcaaaccatcccatttgatgtgcaaaaattcttcaaa
cccacagtttctaacccatcaaattccaactttcaacaacaaaatctatcttcttcgcca
tatcctacaccttctccttacccttcaccttctccacctttctttcacccacagtatcac
caattctacatgcctccttcttctcctacccatgctaattaccaagattccaaatccctt
tctttcccttcaccccctcttagcccttacaatgctggcacccaaattcttgcccttatt
aactcttcccctcaaaaccctgatttcccacctcaaaatcaaccccctaaactgcagcaa
ccgcctcacgctgagtttttgggttctgggggtcccaatgtagggccttcgagggtgccg
agttgtaaattgcctaaaggaaggcggttatcaggcactcaggtgggttatgatattgac
acgaggctgtccggggaggttcagcctcagctcgaagttactcccataaccaagtatggg
tctgatcctcagctggtacttggaaggcagattgctgttaataagtcttacatttgttat
gggttgaaaggaggcagtattaggattcttaatttaaacactgcattgaggtctttgttt
cgtgggcacacgcagaggatcacagacatggccttctttgcggaggatgttcatcttttg
gctagtgtgagtctagagggaaggatatttgtttggaaggtatctgaaggtccagatgaa
gaagagaaaccgcagattacagggaagatagttattgctgttcagatattaggcaatgaa
gaatatgtaaatccacgtatttgttggcaccggcacaaacaagaagttttggtggctggg
attggaaaacacattctgagagttgataccatgaaagttgggaagaatgaagtcttctca
actgatgcaccttcacctctccaatgtcctatagacaagttgattgatgggattcagttg
gttggtaaacatgatggagaagttactgatgtttcaatgtgtcagtggatgattacccgt
ttagtgtctgcttctacagatggcacgataaagatatgggatgaccgcaagtcagtgcca
ctaacagtgttgagaccgcatgacggccaacctgtttattcagctacattcttaactgct
cctcaccgaccagatcatattatactcataacaggggggcccctaaatcaagaaatcaaa
gtttggacatcagcaagtgaagagggttggcttcttccaagcaatactgaaaaatggact
tgcacccagacattggagttgaaaagttctgctgaacctcaaatggaagaagcattcttc
aatcaagttgttgcattatcgcaagctggccttctcttacttgcaaatgctaaaagaaat
gctatttacgctgtacacttagaatatggttcttgtccatctgcatcacgcatggattac
atggcagagttcactgtcactatgcccatattaagttttactgggacaagtgatcctccc
gatgaacatattgttaaaatatattgtgtacagacacaggctatccagcagtatgctttg
gagttatgccagtgcatcccaccaccactggaaaatattggcttggagaagtcagattca
agcatttctcgtgacgctattaacaccgaaggctttgatactttcaatccatctggaaat
aaaccttctgacttacccctttatacttcagttcccaaaccaagtgcacgagtaagtagc
tctgaaaatttaactgcagcgaggtatccttcaagcccccattctattgaggcaaatact
gcacaagagctaaacacttcgaatattgatcccaagcctgcttcttctgctttggcttca
acggcaagcgatgctgatattgtatgtgttgcatcaccaccaacagttcctcctagtcct
aggttatctaggaaaccctctggttttcataactatgaggattatccagttgacagacaa
atggacactgttcgatcgaatttgtctggtctgcattcatcagaagatggttcaaggaat
gatgacaagaaaatggtatcagatgacaaatctggtgcatatactccgcctatcattttc
aagcatccaactcatcttgtgaccccatctgagatattgatggctgcaacatcttctgaa
actactaatgtcaatgagggaaagagtgaaggcgaggtgcacattcaggatgtggttgtc
aataatgatgcacgcaatgctgagttggaggtaaaagtggtgggtgaagcaagatcatct
cagaacaatgaatttggttcccatggagactcccaaaatcgaaatttggaaaatagagag
aaattcttttgctcccaggcttcagatcttggtattcagatgtcgagggagagcagtgcg
atatccagggatgcttacgttgttgatgaatctcagcaagcggatggtgttggtgcatca
gggtcgtatgtgaagcctaatattgctgaggaagaaatcaatgattccagaaaggatctt
tctggaaagggtttggaatcagccataccttctacatatcaacaatcaccaacatcaggt
gcaaaagggaagaagcataaagggaaaggttctcaggcatctgctcacacttccccttct
tcaagtgctttcaattctgcagattctaccactgaaccaggagcaaattccaatctcccc
tcagctgctgctgcatttcctcaaatagcggctatgcaagatatgcttaatcagctaatt
actacacaaaaggaaatgcagaaacaaatgtcaaatattgtcaaccaaccagttacaaaa
gaaggaagaagactagaggctgctctaggacggagtattgaaaaagctcttaaggccaat
actgatgctctatgggctcgttttcaggaagaaaatgcaaaaaatgagaagctgcttcga
gaacatacacaccagataactagcttgatcactaattttatgaacaaggatttggcagta
atgttggacaaagtagtcaagaaggaattagctggagttggaccagctgttattcgtacc
attactccagcaatagagaaaaccgtaacttcagtaatcaatgagtccttccagagaggg
gtcggagataaagcagtgaatcaactagaaaagtctgttaattcgaaactcgaagctata
gttgccaggcaaattcaagcccagtttcaaacttctggcaagcaagcactccaggaggct
ttgaggactagtgtggaagctctagtggtccctgcttttgagatttcatgcaaagccctg
tttgagcaagtagattctgcgtttcagaaagggatggttgagcataccaatgctgctcag
caacagttagagtctgcaagttcttctttggcaattactttaagggatgccataaactcc
gcttcatcaattgctaaaaccttaagtggggaatttgctgaagggcaacggaaactttta
gcaattgcagctgctggagctaactcaaatgctgcaacttcattttcttcccaacttagc
aatggacctttaggtggtctgcatgacaaggttgttgtgcccatggatcccacaaaagag
ctatcaaagttgttatctgaaggcaaatacgaagaagcgttcacaattgcgctgcaaaga
agtgacctctctattgtttcttggttatgttcacaggttgatctacgtacgattctgtca
actgcaccttttcctttgagccaaggagtgctgctctccctcttgcagcagttggcatgc
gacatcaacaaggacactccacgaaaactcacatggatggtggacgtggccacagctatc
aacccaggtgaccaaatgattgcggtgcatgtgcgaccaatctttcaggaagtctacaag
agagtgcatgaaataagtagctcgccattgcttacaggtgcagaccatgcgagtatccgt
gctctcatttatgtcatcaactatgttttaatgacttgtaaatga
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