Gossypium hirsutum (upland cotton): 107925157
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Entry
107925157 CDS
T04793
Name
(RefSeq) protein RTF1 homolog
KO
K15178
RNA polymerase-associated protein RTF1
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107925157
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
107925157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Plus-3
Baculo_p24
Motif
Other DBs
NCBI-GeneID:
107925157
NCBI-ProteinID:
XP_040935434
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All DBs
Position
A10:complement(2195304..2198297)
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AA seq
661 aa
AA seq
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MADLENLLLEAAGRTGTGGRNRHSLPPSRRRREGSYSDGGSDSRDDDSDDDHGYASRKPS
GSQVPLKKRLDPAERDDDQGSQEEGDYDDAGSGRERDSSDESDVGDDLYKNEEDRRQLAQ
LTELEREMILSERADKRGDKKFTEKIRSKRENDRPSRSQRETPPLPSSRGVRSSARSADR
AAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGNRGLSPVKRKPFTASSLSSSSQSE
SESRSNSEDEGSTGDGGMVDSEDERGTWGPNGPTFNDIKEITIRRSKLAKWFMEPFFEEL
IVGCFVRVGIGRSKTGAIYRLCMVRNVDATDPDRTYKLETKTTYKYLNVIWGNESSAARW
QMAMISDSPPQEEEFRQLIREVERSGGRMPSKQDVLEKKEALQKAKTFVYSAATVKQMLQ
EKKSSSSRPLNVAAEKDRLRRDLEIAQSKHDDAEVERIKKRLQQLEASRQSQEKDAKAVR
LAEMNRKNRVENFKNASGLKPVNTGLKAGEAGYDPFSRRWTRSRNYYNAKAPGGDAAAVA
NGDTNGAIGSGNGNDAGAAAAEAGRAATAAALQEAAGAGKLVDTNAPVDEGTESNMLHDF
ELPISLDVLRKFGGHEGAVAGFMARKQRIEATVGCRVPENDGRRHALTLTVSDYKRRRGL
L
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggcagacttagaaaatttgcttcttgaggcagcgggaagaactggtactgggggaagg
aaccgacactcacttccaccatctagaaggcgacgtgaaggttcatattcagatggggga
agtgactctagggatgatgattcggatgatgatcatgggtatgcaagtagaaaaccgtct
ggttcacaagttccattgaagaagaggttagaccctgctgaaagagatgatgatcagggc
agtcaggaagaaggtgattatgatgatgctggttctggtcgagagcgtgacagcagtgat
gaatctgatgttggtgacgatctttacaagaatgaggaagacaggagacagcttgcgcag
ttgactgaactggaaagagaaatgattctgtcggaacgagcagataagagaggtgataag
aaatttactgagaagattagatcgaagcgggaaaacgataggcctagccggtcacagaga
gagactccgcctcttccttcttctcgcggagtgcggtcatcggctagatctgcggatagg
gctgctgctaaagatgatgccctgaatgagttgagagcaaaacggctgaagcagcaggat
ccagaggcacatcgtaagttgagagatgcatctagaggtagttctggcaaccggggctta
tcaccagtcaagaggaaacccttcactgcatcaagtctaagtagctctagtcagagtgag
agtgaaagcaggtctaacagtgaagacgaagggtcaactggggatggcggaatggttgat
agtgaggatgagaggggcacatgggggccaaatgggccaacatttaatgacattaaggaa
attactatcagaaggtcaaaacttgcaaaatggtttatggagccattttttgaggagttg
attgtgggttgttttgtaagagtcggtattggacggtcaaaaactggcgctatctacagg
ctctgcatggtcaggaatgttgatgccacggatcctgatcggacatacaaactagagacc
aagacaacatataagtacttgaatgtgatttggggaaacgaaagctccgctgccaggtgg
cagatggctatgatttcagactccccaccgcaagaggaggagtttagacaattgattagg
gaggtggagcgaagtggaggccggatgccgagcaagcaagatgtgcttgaaaagaaagaa
gcattacagaaggccaaaacttttgtctactcagcagctaccgtaaagcagatgttgcag
gagaaaaagtccagttcatctagaccgttaaatgttgcagctgagaaggaccgattgaga
agggacctagaaattgcacaaagcaagcatgatgatgcagaggttgagaggattaagaag
agactgcagcaactagaggcctcccggcagtcacaggagaaagatgccaaggctgttagg
ttggctgagatgaaccgaaagaacagggttgagaatttcaaaaatgcatctggattgaaa
cctgtaaatactggtttaaaagcaggggaagctgggtatgatccattttcgaggaggtgg
actagatcaaggaactactataatgcaaaggctcctggaggagatgcggcagcggtagct
aatggtgacacaaatggtgcaattggcagtggaaatggcaatgatgcaggggctgctgct
gctgaggctggcagggcagccacagcagctgccttgcaagaagctgcaggtgcggggaaa
ttggttgacacaaatgcccctgtcgatgaagggacagaatctaacatgctacatgacttt
gagcttccgatctcattggacgtgcttcggaagttcggtggtcacgagggcgcggtggct
ggattcatggccaggaaacaaaggatagaagcaaccgttggatgccgagtccccgagaat
gatggaaggagacatgctcttaccttgacagttagtgactacaagagaagaagaggtctc
ctctag
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