KEGG   Gossypium hirsutum (upland cotton): 107926667
Entry
107926667         CDS       T04793                                 
Name
(RefSeq) splicing factor U2af large subunit B-like isoform X1
  KO
K12837  splicing factor U2AF 65 kDa subunit
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107926667
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ghi03041]
    107926667
Spliceosome [BR:ghi03041]
 Complex A
  U2 snRNP components
   U2 related factors
    107926667
 Complex B
    107926667
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_occluded DUF1547
Other DBs
NCBI-GeneID: 107926667
NCBI-ProteinID: XP_040940018
LinkDB
Position
A12:complement(15961548..15965841)
AA seq 584 aa
MTDFEACYQSNGEDLENSNGGVPSPQPREGSHGGLDDHRDSKSQHGSREHERGSSRSREK
EKSRDKGRDKDSDRHRDRERDKERERSKDRDREKDRDRHHRDRRRDRSRERSERRERGRD
RDDDDYHRSRDYERRRDYDRDRGDRNRRGSRRSEHRSKSRSRSRSPSKSKRISGFDMAPP
ASAMLAAGSGGAAAAAAAAVTATTVQIPGNNPTLPGVFPNMFPLATGQQFGGLPLMPVQA
MTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFA
FVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGLSP
GSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCIYQD
LSVTDIACAALNGIKMGDKTLTVRRANQGATQPKPEQESILQHAQQQIALQRLMLQPQGV
PTKVVCLTQAISEDDLRDDEEYGDIVEDMRQEGGKHGALVNVVIPRPNPNGESLPGVGKV
FLEYSDVEGSRKAQAAMNGRRFGENQVIAVFYPENKFAQGEYDG
NT seq 1755 nt   +upstreamnt  +downstreamnt
atgaccgatttcgaagcttgctaccagagtaacggagaggatcttgaaaacagcaatggc
ggtgttccctctcctcagcctcgcgaaggtagtcacggtgggcttgatgatcaccgcgat
tccaaatctcagcatggatcacgtgagcacgagagagggtcttctagaagtagggaaaaa
gagaaaagccgcgataagggaagggataaggattctgatcgacatagggacagggaaaga
gacaaggagagggaaagaagtaaggatagggacagagaaaaggaccgtgaccgtcatcac
agagatcgtcgtagggatcgaagtagggagcggagcgaaaggagagaaaggggaagagat
agagatgatgatgattatcaccgaagtcgagactatgaaaggagaagggattatgacaga
gataggggggacaggaataggcgtgggtctcgtagatctgaacacagatcaaagtcaagg
tcccgctctcgctcaccctcaaagagcaaaaggattagtggctttgacatggcacctcct
gcttcagcaatgttagctgctggttctggtggtgctgctgcggctgctgctgctgccgtc
actgccaccacagtccagattccagggaataatccaaccctacctggagtgtttccaaac
atgtttcctctggcaactggtcagcagtttggtggtctccctcttatgccagttcaggca
atgactcagcaggctacgaggcatgctcggcgcgtctatgttggagggctttctcccact
gcaaatgaacagtcagtcgcgactttcttcagccaggttatggctgcaattggtggaaat
actgctggtcctggggatgctgttgttaatgtctacataaaccatgaaaagaagtttgct
tttgtagagatgagatcagttgaggaagctagtaatgcgatggctttagatgggattatc
tttgagggagcacctgtgaaggttcggagacccagtgactacaacccttcgcttgctgca
actcttggtccaagtcagcccagtcccaatcttaatctagcagctgtaggtctatctcca
gggtctgctggtgggcttgagggtccagaccgcatttttgtgggggggcttccatattac
tttactgaagcgcagatcagggagttgttagagtcttttggaccccttcgaggttttgat
ctagtaaaagatagagaaactggaaactcaaagggctatgccttctgcatatatcaagat
ctgtcagttacggacatcgcttgtgctgctttaaatggaattaaaatgggtgataaaact
ctcactgttaggcgagcaaaccaaggtgctacccagcctaaacctgagcaagagagcatc
cttcagcatgcacagcagcagattgctttgcagaggcttatgttgcaaccacaaggtgtg
cccacaaaggttgtgtgcttgactcaagcaattagtgaagacgatcttagagatgatgag
gagtatggggacattgttgaagacatgaggcaagagggtggaaaacatggtgcattggtg
aatgttgtcataccccgcccgaatccaaatggtgaatcattaccaggtgttgggaaggta
tttctggagtactcagatgtggaaggttcccgaaaagcccaagctgcaatgaatggaagg
agatttggtgaaaatcaagtaattgctgtgttctatcctgagaacaaatttgcacagggg
gagtatgatggctaa

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