Gossypium hirsutum (upland cotton): 107930594
Help
Entry
107930594 CDS
T04793
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107930594
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107930594
Spliceosome [BR:
ghi03041
]
Complex A
U1 snRNP components
U1 related factors
107930594
Complex B
107930594
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
Motif
Other DBs
NCBI-GeneID:
107930594
NCBI-ProteinID:
XP_016717751
UniProt:
A0A1U8LT51
LinkDB
All DBs
Position
A06:complement(2747984..2758352)
Genome browser
AA seq
1026 aa
AA seq
DB search
MANNSQPSSAQPHWPPAVGSMGPQSYGSPLSSQFRPVVPTQQGQHFVPAASQQFRPVGQV
PSPNIGMPAVQNQQMQFSQPMQQFPPRPNQPGLSTPSQQPIQVQYGQTNRPLTSEPPQSH
QSAPPLNSHMPGVGAPGVPPSSYGFAPSSFGLPQNNVSAPSQFHPMSQVHAPVAPVAGQP
WLSTGNQNVSLATPTQHTSQQPPPSSADTNANVPSLTPQSSDWQEHTSADGRRYYYNKRT
RQSSWEKPLELMTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQ
AAASQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVS
GPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVPAPSVGANTAVTRSSETTSTQD
TMHFADGASAQDIEEAKKGMATAGKVNMTPVEEKVPDDEPLVYANKLEAKNAFKSLLESA
NVQSDWTWEQTMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEF
TKMLEESKELTSSMRWSKAQSLFENDERFKAVERARDREDLFENYIVDLERKEREYAAEE
KRRNIAEYRKFLESCDFIKANSQWRKVQDRLEDDERCSRLEKIDRLLIFQDYIHDLEKEE
EEKKKMQKEQLRRAERKNRDAFRKLMEEHVADGTLTAKTYWRDYCLKVKELPQYLAVASN
TSGSTPKDLFEDVAEELDKQYHEDKTRIKEAMKTGKVTMVYSWTFEDFKTAISEDVGSSS
ISDINLKLVYDELLERAKEKEEKEAKKRQRLADDFTRLLHTYKEITASSNWEESKPLFEE
SQEYRSIAEESFRREIFEEYITHLQDKAKEKERKREEEKAKKEKDREEKDKRKEKEKERK
EKEREREREKGKDRTKKDETDSENLDISDSYGHKEEKKKEKEKDRKHRKRHAADDGSSDK
DDREESKKSRRHGSDRKKSRKHAHSPDSDSESRHRKHKRDHRDGSRRNSGYEELEDGELG
EDGEIQ
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atggctaacaattctcaaccctctagtgcgcagccacattggcctcctgcagttggatcc
atgggtccccaaagttatggctctccgttatcttcacagtttcgaccagtggtcccaacg
cagcaagggcaacactttgttccagctgcttcccaacagtttcggcctgttgggcaggtt
ccttctccaaatattgggatgccagctgttcaaaatcagcagatgcagttttctcagcca
atgcagcagtttccaccgcggccaaatcagcctggtctttctacaccttcacaacagcca
atacaggtacaatatggtcaaacaaacaggcctcttacatctgaaccaccacagtcacat
caatctgcacctcctttgaatagtcatatgcctggtgtaggagcccctggagtgccccct
tcatcatatggttttgcgccatcttcatttggcttgccacagaacaatgtcagtgcaccg
tcgcagtttcaccctatgtctcaagtgcatgcacctgttgctccagttgccgggcaacct
tggttgtcaactggaaatcaaaatgtttcacttgctacaccaacacagcatactagccaa
caacctccaccttcttctgctgatacaaatgcaaatgttcctagccttactccgcaatct
tctgattggcaagagcatacatcagctgatggaagaagatactattacaacaaaaggaca
aggcaatctagttgggaaaagcctctggaactgatgacaccaatagagagagctgatgca
tccactgtttggaaggaatttacaactccagaggggagaaagtattaccacaacaaggtt
acaaaggagtctaagtggacaatacctgaggagttgaagttagctcgtgagcaagctcaa
gcagcagctagccaaggaaccccatcaggttcaggagtggctcctcaagctccagttgct
actgctgtctctgcagctgagacacctactacagctattcctgtgagctccaacactttg
caggattcaagcccagtttcagttacgcctgttgctaatccttcacctacttcagtatct
ggaccaacaacaggtcctgttgcacaatcagctgctatgagtgcaactggggttcaactc
cctgttgtgtctgtgacacctgtacctgcagtcccctccagaggttccactgtccctgct
ccttctgtcggtgctaacacagcagtcacaagaagctcagaaactacatcaactcaagac
actatgcattttgcagatggagcttctgctcaggacattgaggaagctaaaaaggggatg
gcaacggctggaaaagttaatatgactccagtggaagagaaggttccagatgatgagcct
ttagtatatgcaaataagctggaggcaaaaaatgctttcaaatcactccttgaatctgca
aatgtgcaatctgattggacttgggagcagacaatgagagaaataattaatgacaaaaga
tatggtgctctgaagacacttggtgaacggaagcaagcctttaatgagtatttgggtcaa
agaaagaaattagaggctgaggaaaggcgcatgagacagaagaaagctcgagaagagttt
acaaagatgttggaagagtccaaggaactaacatcatcaatgagatggagcaaagctcaa
agtttgtttgaaaatgatgaacggtttaaggctgttgaacgagccagagatcgggaagat
ctctttgaaaactatatagtggatcttgagaggaaggaaagggaatatgctgcagaggaa
aaaaggcggaatatagcagaatacaggaaatttctggaatcctgtgactttattaaggca
aacagccagtggcggaaagttcaagatcgcttagaggatgacgaaagatgctcacgtctt
gaaaaaattgaccgcttgctcatattccaggactacattcatgacttggagaaggaagaa
gaggaaaaaaagaagatgcaaaaggaacaactgagacgtgctgagcgcaaaaaccgtgat
gcatttcgtaagctaatggaagaacacgttgccgatggcactcttacggctaaaacttat
tggcgagattattgtttaaaggtgaaagaattgcctcagtatcttgctgttgcatctaac
acctcaggttcaactccaaaagatttgtttgaggatgttgctgaagaattagacaaacag
tatcatgaagacaaaacccgcataaaagaagcaatgaagacagggaaggttactatggtt
tactcatggacatttgaagacttcaagactgctatttcagaagatgttggttcctcatcg
atatcggatattaacttaaagcttgtgtatgatgagctgctcgagagagccaaggagaag
gaggagaaagaggctaaaaaacgtcaacgtctagccgatgacttcactagactattacat
acatataaggagataaccgcttcttctaactgggaggaatcgaaaccactttttgaagaa
agccaagaatacagatcaattgcggaagaaagctttaggagagagatctttgaggaatac
attacacacttacaggataaagctaaagaaaaggagcgtaaacgagaggaggaaaaggct
aaaaaggagaaagatagagaagagaaagataaacggaaagagaaggagaaggagagaaag
gagaaggaaagagaacgggagagggaaaaaggtaaagaccgaactaaaaaagatgaaaca
gatagtgagaatttagatatatctgacagctacggccataaagaggagaagaaaaaggag
aaggaaaaagacaggaaacaccgtaaacgacatgctgctgatgatgggagttctgacaag
gatgatagagaggagtcaaagaagtctcgtagacacggtagcgaccgtaagaaatctaga
aagcatgctcactcacccgattctgacagtgaaagccgacatagaaaacacaagagagat
caccgtgacggctcacgccgaaacagtggttacgaggagctggaagatggcgagctcggt
gaggatggtgaaatccagtag
DBGET
integrated database retrieval system
