Gossypium hirsutum (upland cotton): 107934847
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Entry
107934847 CDS
T04793
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 21
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107934847
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107934847
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107934847
Spliceosome [BR:
ghi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
107934847
Complex C
U5 SnRNP specific factors
107934847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF2608
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
107934847
NCBI-ProteinID:
XP_016722847
UniProt:
A0A1U8M7R1
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All DBs
Position
D02:complement(2094777..2097147)
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AA seq
683 aa
AA seq
DB search
MSNNNPPKPVFLTKAQREQLALQRLEEQRAQQKRRIEDLRSANGAANNRSDSSSGKPTSD
SSDRRDRERQRERDRESERRNREREREEEAKARERARSEKLAEREREKELEAIKEQYLGS
KKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQNPHEAQLLFGRGFRAGMDRREQKKL
AAKNEKEMRDEIRKKDGVEEKPEEAAAQKLKEEAANTYDTFDMRVDKHWSDKKLEEMTER
DWRIFREDFNISYKGSKIPRPMRSWSESKLTAELLKAVERVGYKKPSPIQMAAIPLGLQQ
RDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETM
KFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLLDCLERRYAVLNQCNYVVLD
EADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLAR
KYLRNPVVVTIGTAGKATDLISQHVMMVKESEKFPRLQKLLDELGDKTAIVFVNTKKNAD
TISKNLDKSGYKVTTLHGGRSQEQREISLEGFRAKRFNVLVATDVAGRGIDIPDVAHVIN
YDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDTDVFFDLKQMLVQSGSPVPHELAKHE
ASKFKPGTIPDRPPRRNDTVFAH
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacaacaatcctccaaaacccgtgtttttaaccaaagcccaacgcgaacagtta
gcccttcaacgcctcgaggagcaacgcgcccaacagaaacgccgcatcgaagacctccgt
tccgccaatggcgccgccaataaccgttccgattcttcttctggtaaacccacttctgat
tcttccgaccgacgcgaccgggaacggcagcgtgagagggatcgagagtctgagcggagg
aaccgtgagcgcgagcgggaggaggaagccaaggcgcgggaacgggcgaggtcggagaag
ttagcggagagggaaagggagaaggagttggaagcgattaaagagcaatatctcggatcg
aagaagcccaagaaaagggttatcaaacctagtgagaaatttaggttttctttcgattgg
gaaaacacggaagatacttcgagggatatgaattctttgtatcaaaaccctcatgaggct
cagcttttgtttgggagagggtttagagctgggatggatcggagagaacagaagaagtta
gcggctaagaatgaaaaggagatgagagacgaaattaggaaaaaagatggggttgaagag
aaaccagaggaagctgcggcacagaagttaaaagaagaagcagcgaatacttatgatact
tttgatatgagggtcgataagcattggtctgataagaagcttgaggaaatgactgaaaga
gattggaggattttcagggaagattttaatatttcctataaagggtcgaaaataccacgc
ccaatgaggagttggagtgagagtaaattgactgccgagttattgaaagcagtggaaaga
gttgggtataagaagccttcacctatacaaatggcggctattcctttggggttgcaacaa
agggatgtaattgggattgcagagacaggatcaggtaagactgctgcttttgttttgcct
atgttagcttatatatctagattacctcctatgagtgaagagaatgaagctgaggggcct
tatgctgttgtaatggctccgactcgtgaacttgctcaacaaattgaggatgaaaccatg
aagtttgcacattatttaggtattaaagttgtttcaattgttggtggtcagtcaatagag
gaacaagggtttaggattagacaaggttgtgaggttgttattgcgacccccggtcgtttg
ctcgattgtttagagaggcggtatgctgtgttgaatcagtgtaattatgtggttcttgat
gaagctgataggatgatagatatgggttttgaaccccaagttgttggtgtattggatgct
atgccatccagtaatttgaaaccggagaatgaagatgaagagcttgatgaaaaaaggata
tatcggactacttatatgtttagtgctacgatgcctcccgctgttgagaggctagctagg
aaatatttaaggaatcctgttgtggtcaccattggtacagctggaaaggctaccgattta
atttctcaacatgtgatgatggtgaaggaatcagagaagtttccgagattacagaagttg
cttgatgagcttggggataagaccgcaattgtgtttgtcaataccaagaagaatgctgat
actatttcaaagaatcttgataagtctggttataaagtaacaactttgcatggtggaagg
tcacaggagcagagagaaattagccttgagggttttagggccaagagattcaatgtcctt
gttgctacagatgttgcaggtcgtggaattgatattccagatgtggctcatgtaataaac
tatgatatgcctggtaatattgaaatgtatacgcatcgtattggaagaacaggacgtgca
gggaagactggtgtggctacaacatttttgactcttcacgacaccgatgtcttcttcgat
ctcaagcagatgcttgttcaaagtggcagccctgtgcctcatgagctggcaaagcatgaa
gcttctaaattcaaaccaggaacaattcctgatagacctcctagacgcaatgacactgta
tttgcacactga
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