Gossypium hirsutum (upland cotton): 107936976
Help
Entry
107936976 CDS
T04793
Name
(RefSeq) RNA-binding protein 39-like isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107936976
Spliceosome [BR:
ghi03041
]
Common components
Common spliceosomal components
General mRNP proteins
107936976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_7
DUF1866
RRM_8
Motif
Other DBs
NCBI-GeneID:
107936976
NCBI-ProteinID:
XP_040972718
LinkDB
All DBs
Position
A01:148878..156336
Genome browser
AA seq
591 aa
AA seq
DB search
MDFDEYEYLENTVENPEPQKAKKENGNGSVDTVKSEERNRSRSSKHKRDERADGSDDYHH
PSKHSKSREESSRDHDQRKELGLSQLSRSRDGEKDRQRSSREHRSKDRDREDRNGREREK
ERDRDRKERDRESERDRERERERERSRRSRSRSEREPDKSRDMEFREREKEREPRERDRG
SRRYKDKKEDAAEAEVDPERDQRTVFAYQISLKASERDVYEFFSRAGKVRDVRLIMDRNS
RRSKGVGYIEFYDVMSVPMAIALSGQPLIGQPVMVKPSEAEKNLVQSTTSASAGQTGPYA
AGGRKLYVGNLHFNITEDQLRQVFEPFGSVELVQLPLDETGHSKGFGFVQFARLEDAKNA
LNLNGQLEIGGRVIKVSTVTDQGVSQDFGTNATAADLDDDDGGGLSLNSSSRALLMAKLD
RSGTASSIAGSVGMPANNSTGLTASTAPILGVAPSLPSLVPPTIPTSISTIPGLPGGLQL
PTNGIPAIDTIGSPSECLLLKNMFDPTLETEPEFDLDIKEDVQEECSKFGKLKHIHVDRD
SAGFVYLRFEDAQGAINAQRNLHGRWFAGKMITATYMVPQTYEAKFPSSKR
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggattttgatgaatatgagtatttagagaacacagttgagaatcctgagcctcaaaaa
gcaaagaaagaaaatggaaatggcagcgttgatactgtcaaatctgaggagagaaatcga
agtcggagttcgaagcataagagggacgagagagctgatggttctgatgattatcatcat
ccttccaaacactcgaagtcgagagaggagtcatcacgtgatcatgaccagcgcaaggaa
ctaggcttatctcagctgtcacggtctagagatggagagaaggataggcaacgaagcagt
cgagagcacaggtccaaggacagggatagggaggataggaatgggagggaaagagagaag
gaacgtgatcgagacaggaaagagcgtgatcgtgaaagtgagagggatagagaaagggaa
agggagagagagcggtcaaggagaagcaggagccgatcagaaagagaaccagacaagagt
cgtgacatggagttcagagaaagagaaaaggagagagagccaagggaacgagacagagga
agcaggaggtataaagacaaaaaggaagatgcggcagaggctgaggttgatccagaaagg
gatcagagaaccgtatttgcttatcagatatccttgaaggctagtgaaagagacgtttat
gaattcttctctagggctggcaaggtacgagatgttcgcctcattatggatcgaaactca
agacgttctaaaggggttgggtatattgagttctatgatgttatgtctgtccctatggca
atagcactctccggacagcctcttattggtcaaccagtgatggtgaaaccatctgaagct
gagaagaatctagttcaatcaactacatctgcatcagctggacagactggtccatatgct
gctggcggtagaaagttgtatgttggtaacctacatttcaacattacagaagaccaactg
cgtcaggtttttgaaccttttggttctgtggagctcgttcagttgcctcttgatgaaact
ggtcattctaaaggttttggttttgtccagtttgcccgtctggaagatgcaaagaatgca
ttgaatttgaacggacagctggagattgggggtcgagtaatcaaggtatcgactgttact
gatcaaggtgtatcgcaagattttggaacgaatgctactgctgctgatcttgatgatgat
gatggtggtggcttgtctctgaattcatcatctcgagcacttcttatggcaaagctggat
cgcagtggcactgcatcaagtattgctggcagtgtaggcatgcctgctaataatagcact
ggccttactgcttcaacagcaccaattcttggagttgcaccttcattgccatcccttgtt
cctcctacgataccgacctctatttctaccattcctggacttccaggtggtcttcaactc
cctacgaatggcatccctgctattgacacaattggaagtccaagcgaatgcctgttgtta
aagaatatgtttgatccaaccctggagacggaaccagaatttgatttggatatcaaagag
gatgttcaggaagaatgtagcaagtttggaaaattgaagcatatacacgtggacagggac
agtgctggttttgtgtacttacgatttgaagatgcacaaggtgcaatcaatgcacagcgg
aacctacatgggagatggttcgctggaaaaatgatcaccgcaacatacatggtgccacaa
acttacgaggcaaagtttccaagcagcaagagatag
DBGET
integrated database retrieval system
