Gossypium hirsutum (upland cotton): 107937765
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Entry
107937765 CDS
T04793
Name
(RefSeq) protein RTF1 homolog
KO
K15178
RNA polymerase-associated protein RTF1
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107937765
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
107937765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Plus-3
Baculo_p24
Motif
Other DBs
NCBI-GeneID:
107937765
NCBI-ProteinID:
XP_016726218
UniProt:
A0A1U8ML16
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Position
D10:complement(2172207..2175193)
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AA seq
661 aa
AA seq
DB search
MADLENLLLEAAGRTGTGGRNRHSLPPSRRRREGSYSDGGSDSRDDDSDDDHGYASRKPS
GSQVPLKKRLDPAERDDDQGSQEEGDYNDAGSGRERDSSDESDVGDDLYKNEEDRRQLAQ
LTELEREMILSERADKRGDKKFTEKIRSKRENDRPSRSQRETPPLPSSRGVRSSARSADR
AAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGNRGLSPVKRKPFTASSLSSSSQSE
SESRSNSEDEGSTGDGGMVDSEDERGTWGPNGPTFNDIKEITIRRSKLAKWLMEPFFEEL
IVGCFVRVGIGRSKTGAIYRLCMVRNVDATDPDRTYKLENKTTYKYLNVVWGNESSAARW
QMAMISDSPPLEEEFRQLIREVERSGGRMPSKQDVLEKKEVLQKAKTFVYSAATVKQMLQ
EKKSSSSRPLNVAAEKDRLRRDLEIAQSKHDDAEVERIKKRLQQLEASRQSQEKDAKAVR
LAEMNRKNRVENFKNASGLKPVNTGLKAGEAGYDPFSRRWTRSRNYYNAKAPGGDAAAVS
NGDTNGAIGSGNGNDAGAAAAEAGRAATAAALQEAAGAGKLVDTNAPVDEGTESNMLHDF
ELPISLDVLRKFGGHEGAVAGFMARKQRIEATVGCRVPENDGRRHALTLTVSDYKRRRGL
L
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggcagacttagaaaatttgcttcttgaggcagcgggaagaactggtactggaggaagg
aaccggcactcccttccaccatctagaaggcgacgtgaaggttcatattcagatggggga
agtgactctagggatgatgattcggatgatgatcatgggtatgcaagtagaaaaccgtct
ggttcacaagttccattgaagaagaggttagaccctgctgaaagagatgatgatcagggc
agtcaggaagaaggtgattataatgatgctggttctggtcgagagcgtgacagcagtgat
gaatctgatgttggtgacgatctttacaagaatgaggaagacaggagacagcttgcgcag
ttgactgaactggaaagagaaatgattctgtcggaacgagcagataagagaggtgataag
aaatttactgagaagattagatcgaagcgggaaaacgataggcctagccggtcacagaga
gagactccacctcttccttcttctcgtggagtgcggtcatcggctagatctgcggatagg
gctgctgctaaagatgatgctctgaatgagttgagagcaaaacggctgaagcagcaggat
ccagaggcacatcgtaagttgagagatgcatctagaggcagctctggcaaccggggctta
tcaccagtcaagaggaaacccttcactgcatcaagtctaagtagctctagtcagagtgag
agtgaaagcaggtcaaacagtgaagacgaagggtcaactggggatggcggaatggttgat
agtgaggatgagaggggcacatgggggccaaatgggccaacatttaatgacattaaggaa
attactatcagaaggtcaaaacttgcaaaatggttaatggagccatttttcgaagagttg
attgtgggttgttttgtaagagtcggcattggaaggtcaaaaactggcgctatctacagg
ctctgcatggtcaggaatgttgatgccacggatcctgatcggacatacaaactagagaac
aagacaacatataagtacttgaatgtggtttggggaaatgaaagctccgctgccaggtgg
cagatggctatgatttcagactccccaccgctagaggaggagtttagacaattaattagg
gaggtggagcgaagtggaggccggatgccgagcaagcaagatgtgcttgaaaagaaagaa
gtgttacagaaggccaaaacttttgtctactcagcagctaccgtaaagcagatgttgcag
gagaaaaagtccagttcatctagaccgttaaatgttgcagctgagaaggaccgactgaga
agggacctagaaattgcacaaagcaagcatgatgatgcagaggttgagaggattaagaag
agactgcagcaactagaggcttcccggcagtcacaggagaaagatgccaaggctgttagg
ttggctgagatgaaccgaaagaacagagttgagaatttcaaaaatgcatccggattgaaa
cctgtaaatactggtttaaaagcaggggaagctgggtatgatccattttcgaggaggtgg
actagatcaaggaactactataatgcaaaggctcctggaggagatgcagcagcggtatct
aatggtgacacaaacggtgcaattggcagtggaaatggcaacgatgcaggggctgctgct
gctgaggctggcagggcagccacagcagctgccttgcaagaagctgcaggtgcggggaaa
ttggttgacacaaatgcccctgtcgatgaagggacggaatctaacatgctacatgacttt
gagcttccaatctcattggacgtgcttcggaagttcggcggtcacgagggcgcggtggct
ggattcatggccaggaaacaaaggatagaagcaaccgtcggatgccgagttcccgagaat
gatggaaggagacatgctcttaccttgacagttagtgactacaagagaagaagaggtctc
ctttag
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